View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19250_low_5 (Length: 398)

Name: NF19250_low_5
Description: NF19250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19250_low_5
NF19250_low_5
[»] chr8 (5 HSPs)
chr8 (10-398)||(34108820-34109221)
chr8 (79-150)||(29608697-29608765)
chr8 (323-372)||(34120959-34121008)
chr8 (133-194)||(3693504-3693565)
chr8 (133-194)||(18257480-18257541)
[»] chr3 (3 HSPs)
chr3 (93-194)||(11500468-11500566)
chr3 (80-194)||(36644760-36644875)
chr3 (92-128)||(22516824-22516860)
[»] chr7 (2 HSPs)
chr7 (92-190)||(3404002-3404097)
chr7 (92-129)||(25032825-25032862)
[»] chr4 (1 HSPs)
chr4 (92-194)||(36690225-36690323)
[»] chr1 (6 HSPs)
chr1 (79-194)||(28111467-28111578)
chr1 (104-194)||(24574035-24574122)
chr1 (202-244)||(2758218-2758260)
chr1 (79-124)||(16948925-16948970)
chr1 (79-119)||(2758297-2758337)
chr1 (90-126)||(16904747-16904783)
[»] chr2 (1 HSPs)
chr2 (92-194)||(15545182-15545281)
[»] chr5 (6 HSPs)
chr5 (58-128)||(10912149-10912220)
chr5 (92-189)||(21178305-21178399)
chr5 (92-194)||(25815207-25815306)
chr5 (138-194)||(11783033-11783089)
chr5 (138-194)||(36409577-36409633)
chr5 (77-126)||(11857386-11857435)


Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 10 - 398
Target Start/End: Original strand, 34108820 - 34109221
Alignment:
Q  10 ataatactgcatgcattaaaggagaaaaaagattcacaaaattacaaaaa-ggaatcataaattgatatt----------------ttttgtcaatcgga 92  Q
    |||| ||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||                |||||||||| | |    
T  34108820 ataacactgcatgcattaaaggagaaaaaagattcacaaaataaaaaaaaaggaatcataaattgatattcattaaggaatatgttttttgtcaattgca 34108919  T
Q  93 aacaaaactttactttatttttcattgttatgcattattataaacaatagttattgtaattaagcttagaaacttgaatgttaaaggctaagtaaattga 192  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  34108920 aacaaaactttactttatttttcattgttatgcattattataaacaatagttattgtaattaagcttagaaaattgaatgttaaaggctaagtaaattga 34109019  T
Q  193 gtnnnnnnn-ttcattataggatatcatataaagttcacaggaaataaata--gtgacnnnnnnntataataacatgttaatnnnnnnnnnnnnnctatg 289  Q
    ||        |||||||||| ||||||||||||||||||||||||||||||  |||||       |||||||||||||||||                ||    
T  34109020 gtaaaaaaaattcattatagaatatcatataaagttcacaggaaataaatatagtgacaaaaaaatataataacatgttaataaaaaaaac-------tg 34109112  T
Q  290 caatgaagaaggtgctatttttaaagaacaaagtggagatattccagttgcagctacagatgatgtaacattcaaacgtggtcttattatactatattaa 389  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34109113 caatgaagaaggtgctattttcaaagaacaaagtggagatattccagttgcagctacagatgatgtaacattcaaacgtggtcttattatactatattaa 34109212  T
Q  390 gaaattctt 398  Q
    |||||||||    
T  34109213 gaaattctt 34109221  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 79 - 150
Target Start/End: Original strand, 29608697 - 29608765
Alignment:
Q  79 ttttgtcaatcggaaacaaaactttactttatttttcattgttatgcattattataaacaatagttattgta 150  Q
    |||||| ||| | ||||||||||||||||||||||||||||||||||   ||||||||||||||||| ||||    
T  29608697 ttttgtaaattgcaaacaaaactttactttatttttcattgttatgc---attataaacaatagttagtgta 29608765  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 323 - 372
Target Start/End: Original strand, 34120959 - 34121008
Alignment:
Q  323 tggagatattccagttgcagctacagatgatgtaacattcaaacgtggtc 372  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  34120959 tggagatattccagttccagctacaaatgatgtaacattcaaacgtggtc 34121008  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 133 - 194
Target Start/End: Original strand, 3693504 - 3693565
Alignment:
Q  133 taaacaatagttattgtaattaagcttagaaacttgaatgttaaaggctaagtaaattgagt 194  Q
    |||| |||||||| |||||||||||||| |||||||| |||| |||||||| ||||||||||    
T  3693504 taaataatagttagtgtaattaagcttaaaaacttgagtgttcaaggctaaataaattgagt 3693565  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 133 - 194
Target Start/End: Complemental strand, 18257541 - 18257480
Alignment:
Q  133 taaacaatagttattgtaattaagcttagaaacttgaatgttaaaggctaagtaaattgagt 194  Q
    |||| |||||||| ||||| ||| ||||||||||||| |||| |||||||| ||||||||||    
T  18257541 taaataatagttagtgtaaataaacttagaaacttgagtgttcaaggctaaataaattgagt 18257480  T

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Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 93 - 194
Target Start/End: Complemental strand, 11500566 - 11500468
Alignment:
Q  93 aacaaaactttactttatttttcattgttatgcattattataaacaatagttattgtaattaagcttagaaacttgaatgttaaaggctaagtaaattga 192  Q
    ||||||||||||||||||||||||||||||||||||||   ||| ||||| || |||||||||||||||||||||||||||| |||||||||||||||||    
T  11500566 aacaaaactttactttatttttcattgttatgcattat---aaataatagctagtgtaattaagcttagaaacttgaatgtttaaggctaagtaaattga 11500470  T

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Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 80 - 194
Target Start/End: Original strand, 36644760 - 36644875
Alignment:
Q  80 tttgtcaatcggaaacaaaactttactttatttttcattgttatgcatt-attataaacaatagttattgtaattaagcttagaaacttgaatgttaaag 178  Q
    ||||||||| | ||||||||||||| ||||||||||||||||||  ||  ||| ||||||||||||| ||||||||||||||||||||||| |||| |||    
T  36644760 tttgtcaattgcaaacaaaactttaatttatttttcattgttatatatgcattctaaacaatagttaatgtaattaagcttagaaacttgagtgttcaag 36644859  T
Q  179 gctaagtaaattgagt 194  Q
    ||| | ||||||||||    
T  36644860 gctgaataaattgagt 36644875  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 128
Target Start/End: Original strand, 22516824 - 22516860
Alignment:
Q  92 aaacaaaactttactttatttttcattgttatgcatt 128  Q
    |||||||| |||||||||||||||||| |||||||||    
T  22516824 aaacaaaaatttactttatttttcatttttatgcatt 22516860  T

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Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 92 - 190
Target Start/End: Complemental strand, 3404097 - 3404002
Alignment:
Q  92 aaacaaaactttactttatttttcattgttatgcattattataaacaatagttattgtaattaagcttagaaacttgaatgttaaaggctaagtaaatt 190  Q
    |||||||| ||||||||||||||||||||||||||   ||||||| ||||||||  |||||||||||||||||||||||| || |||| |||| |||||    
T  3404097 aaacaaaattttactttatttttcattgttatgca---ttataaataatagttagcgtaattaagcttagaaacttgaattttcaaggttaagcaaatt 3404002  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 92 - 129
Target Start/End: Original strand, 25032825 - 25032862
Alignment:
Q  92 aaacaaaactttactttatttttcattgttatgcatta 129  Q
    |||||||| |||||||||||||||||||||||||||||    
T  25032825 aaacaaaagtttactttatttttcattgttatgcatta 25032862  T

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Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 92 - 194
Target Start/End: Complemental strand, 36690323 - 36690225
Alignment:
Q  92 aaacaaaactttactttatttttcattgttatgcattattataaacaatagttattgtaattaagcttagaaacttgaatgttaaaggctaagtaaattg 191  Q
    ||||||||||||||||||||| ||||||||||||   |||| ||| |||||||| || ||||||||||||||||||||| | | ||||||||||||||||    
T  36690323 aaacaaaactttactttatttctcattgttatgc---attaaaaataatagttagtg-aattaagcttagaaacttgaaggctcaaggctaagtaaattg 36690228  T

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Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 79 - 194
Target Start/End: Complemental strand, 28111578 - 28111467
Alignment:
Q  79 ttttgtcaatcggaaacaaaactttactttatttttcattgttatgcattattataaacaatagttattgtaattaagcttagaaacttgaatgttaaag 178  Q
    |||||| ||| | ||||||||||||||||||||||||||||||||||||     |||| || ||||| |||||| |||||||||||||||| |||| |||    
T  28111578 ttttgtaaattgcaaacaaaactttactttatttttcattgttatgcatc----taaataaaagttagtgtaatcaagcttagaaacttgagtgttcaag 28111483  T
Q  179 gctaagtaaattgagt 194  Q
     |||| ||||||||||    
T  28111482 tctaaataaattgagt 28111467  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 194
Target Start/End: Complemental strand, 24574122 - 24574035
Alignment:
Q  104 actttatttttcattgttatgcattattataaacaatagttattgtaattaagcttagaaacttgaatgttaaaggctaagtaaattgagt 194  Q
    ||||||||||| |||| |||||||| |   ||| |||||  |||||||||||| |||||||||||| |||| |||||||| ||||| ||||    
T  24574122 actttattttttattggtatgcattct---aaataataggcattgtaattaagattagaaacttgagtgttgaaggctaaataaatcgagt 24574035  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 202 - 244
Target Start/End: Complemental strand, 2758260 - 2758218
Alignment:
Q  202 ttcattataggatatcatataaagttcacaggaaataaatagt 244  Q
    |||||||||  |||||||||||||||||||| |||||||||||    
T  2758260 ttcattatacaatatcatataaagttcacagaaaataaatagt 2758218  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 124
Target Start/End: Complemental strand, 16948970 - 16948925
Alignment:
Q  79 ttttgtcaatcggaaacaaaactttactttatttttcattgttatg 124  Q
    |||||| ||| ||||||||||| |||||| ||||||||||||||||    
T  16948970 ttttgtaaattggaaacaaaacattacttaatttttcattgttatg 16948925  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 119
Target Start/End: Complemental strand, 2758337 - 2758297
Alignment:
Q  79 ttttgtcaatcggaaacaaaactttactttatttttcattg 119  Q
    |||||| ||| | ||||||||||||||||||||||||||||    
T  2758337 ttttgtaaattgcaaacaaaactttactttatttttcattg 2758297  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 90 - 126
Target Start/End: Original strand, 16904747 - 16904783
Alignment:
Q  90 ggaaacaaaactttactttatttttcattgttatgca 126  Q
    |||||||||||| |||||||||||||||| |||||||    
T  16904747 ggaaacaaaactctactttatttttcattattatgca 16904783  T

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Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 92 - 194
Target Start/End: Original strand, 15545182 - 15545281
Alignment:
Q  92 aaacaaaactttactttatttttcattgttatgcattattataaacaatagttattgtaattaagcttagaaacttgaatgttaaaggctaagtaaattg 191  Q
    ||||||||||||||||||||||||||| | ||||||| |   ||| |||||||  ||||||||||||||||||||||| |||  |||||||| ||| |||    
T  15545182 aaacaaaactttactttatttttcattttaatgcattct---aaataatagttggtgtaattaagcttagaaacttgagtgtacaaggctaaataatttg 15545278  T

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Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 58 - 128
Target Start/End: Complemental strand, 10912220 - 10912149
Alignment:
Q  58 aaggaatcataaattgatatt-ttttgtcaatcggaaacaaaactttactttatttttcattgttatgcatt 128  Q
    ||||||||||||||| ||||| |||||| ||| | |||||||||||||||||||||||||||||||| ||||    
T  10912220 aaggaatcataaattaatattcttttgtaaattgcaaacaaaactttactttatttttcattgttatccatt 10912149  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 92 - 189
Target Start/End: Complemental strand, 21178399 - 21178305
Alignment:
Q  92 aaacaaaactttactttatttttcattgttatgcattattataaacaatagttattgtaattaagcttagaaacttgaatgttaaaggctaagtaaat 189  Q
    |||||||| ||||||||| ||||||||||||||||||     ||| |||||||  |||||||||| |||||||||||| |||| |||||||| |||||    
T  21178399 aaacaaaattttactttagttttcattgttatgcattcc---aaataatagttggtgtaattaaggttagaaacttgagtgttcaaggctaaataaat 21178305  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 92 - 194
Target Start/End: Complemental strand, 25815306 - 25815207
Alignment:
Q  92 aaacaaaactttactttatttttcattgttatgcattattataaacaatagttattgtaattaagcttagaaacttgaatgttaaaggctaagtaaattg 191  Q
    |||||||| |||||||||||||| ||||||||||| ||    ||| |||| ||| | |||||||| ||||||||||||||||| ||| | ||||||| ||    
T  25815306 aaacaaaattttactttattttttattgttatgcaataa---aaataataattagtataattaagtttagaaacttgaatgttcaagaccaagtaaaatg 25815210  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 194
Target Start/End: Original strand, 11783033 - 11783089
Alignment:
Q  138 aatagttattgtaattaagcttagaaacttgaatgttaaaggctaagtaaattgagt 194  Q
    |||||||| |||||||||||||||||| |||| | ||||||| ||| ||||||||||    
T  11783033 aatagttagtgtaattaagcttagaaatttgagtcttaaaggttaaataaattgagt 11783089  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 194
Target Start/End: Complemental strand, 36409633 - 36409577
Alignment:
Q  138 aatagttattgtaattaagcttagaaacttgaatgttaaaggctaagtaaattgagt 194  Q
    |||||||| | |||||||| |||||||| |||||||| || ||||||||||||||||    
T  36409633 aatagttagtttaattaagattagaaacatgaatgttcaatgctaagtaaattgagt 36409577  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 126
Target Start/End: Complemental strand, 11857435 - 11857386
Alignment:
Q  77 ttttttgtcaatcggaaacaaaactttactttatttttcattgttatgca 126  Q
    |||||||| ||| | ||||||||| |||||||||||| ||||||||||||    
T  11857435 ttttttgtaaattgcaaacaaaacgttactttattttccattgttatgca 11857386  T

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