View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19250_low_7 (Length: 390)

Name: NF19250_low_7
Description: NF19250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19250_low_7
NF19250_low_7
[»] chr7 (10 HSPs)
chr7 (110-382)||(28885200-28885472)
chr7 (110-263)||(28880607-28880760)
chr7 (42-109)||(28885496-28885563)
chr7 (46-109)||(19989093-19989156)
chr7 (47-110)||(32553682-32553745)
chr7 (48-109)||(31448378-31448439)
chr7 (63-109)||(5516316-5516362)
chr7 (48-109)||(9077525-9077586)
chr7 (262-361)||(28880489-28880590)
chr7 (48-108)||(11575456-11575516)
[»] chr2 (12 HSPs)
chr2 (48-109)||(33810617-33810678)
chr2 (48-110)||(19246494-19246557)
chr2 (48-109)||(9154149-9154210)
chr2 (48-109)||(12457018-12457079)
chr2 (48-105)||(12890265-12890322)
chr2 (48-109)||(38985126-38985187)
chr2 (51-110)||(14949237-14949296)
chr2 (48-110)||(39028775-39028837)
chr2 (63-109)||(43939451-43939497)
chr2 (48-108)||(36887336-36887396)
chr2 (48-89)||(19477208-19477249)
chr2 (64-109)||(21924850-21924895)
[»] chr8 (7 HSPs)
chr8 (48-108)||(38125599-38125659)
chr8 (48-110)||(13481319-13481381)
chr8 (48-109)||(15196514-15196575)
chr8 (63-106)||(6438224-6438267)
chr8 (48-106)||(1673900-1673958)
chr8 (55-109)||(24802569-24802623)
chr8 (48-109)||(36430424-36430485)
[»] chr4 (6 HSPs)
chr4 (48-109)||(32564843-32564904)
chr4 (48-110)||(44302388-44302450)
chr4 (48-108)||(42576932-42576992)
chr4 (58-109)||(4473072-4473123)
chr4 (45-77)||(12624914-12624946)
chr4 (48-84)||(50438172-50438208)
[»] chr5 (10 HSPs)
chr5 (48-108)||(16725021-16725081)
chr5 (48-109)||(9475083-9475144)
chr5 (48-108)||(8564909-8564969)
chr5 (48-107)||(28601930-28601989)
chr5 (48-102)||(30264571-30264625)
chr5 (48-88)||(8911751-8911791)
chr5 (46-108)||(21743029-21743091)
chr5 (68-106)||(41328615-41328653)
chr5 (48-109)||(3103152-3103213)
chr5 (47-80)||(21743013-21743046)
[»] scaffold0064 (1 HSPs)
scaffold0064 (48-109)||(59414-59475)
[»] chr1 (9 HSPs)
chr1 (49-109)||(7255148-7255208)
chr1 (55-109)||(6951051-6951105)
chr1 (48-109)||(11248643-11248704)
chr1 (48-108)||(46836392-46836452)
chr1 (55-105)||(43325687-43325737)
chr1 (48-103)||(6380151-6380206)
chr1 (48-110)||(31922854-31922916)
chr1 (59-104)||(25089319-25089364)
chr1 (48-109)||(29058041-29058102)
[»] scaffold0001 (1 HSPs)
scaffold0001 (49-108)||(504606-504665)
[»] chr3 (6 HSPs)
chr3 (48-109)||(42380565-42380626)
chr3 (48-109)||(42409279-42409340)
chr3 (55-109)||(33896660-33896714)
chr3 (63-108)||(25124710-25124755)
chr3 (48-109)||(42380736-42380797)
chr3 (48-109)||(42409450-42409511)
[»] scaffold0009 (1 HSPs)
scaffold0009 (48-109)||(143351-143412)
[»] chr6 (2 HSPs)
chr6 (48-109)||(1520914-1520975)
chr6 (49-109)||(30416937-30416997)
[»] scaffold0013 (1 HSPs)
scaffold0013 (63-110)||(61588-61635)


Alignment Details
Target: chr7 (Bit Score: 245; Significance: 1e-136; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 110 - 382
Target Start/End: Complemental strand, 28885472 - 28885200
Alignment:
Q  110 ataagaacactaaccgtttcatatggattgacaccactaactcctgcattgttcacctacaacagaatttaaaatacataagatttcaaaagattcactc 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||    
T  28885472 ataagaacactaaccgtttcatatggattgacaccactaactcctgcattgttcacctacaacaaaatttaaaatacttaagatttcaaaagattcactc 28885373  T
Q  210 gtataaaactaaggataacaaaaaagctggcttgtcatgttctttactttttgtgatatcataaaacttattattattttgccatctattatagacagct 309  Q
    |||||||||||||||| ||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28885372 gtataaaactaaggatcacaaacaagttggcttgtcatgttcttttctttttgtgatatcataaaacttattattattttgccatctattatagacagct 28885273  T
Q  310 tagggaagtgtgtcatgatctatcgtgaactgatacttgaaaatcgtttgaaattttaacaatcatctgtgct 382  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  28885272 tagggaagtgtgtcatgatctatcatgaactgatacttgaaaatcgtttgaaattttaacaatcatctgtgct 28885200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 110 - 263
Target Start/End: Complemental strand, 28880760 - 28880607
Alignment:
Q  110 ataagaacactaaccgtttcatatggattgacaccactaactcctgcattgttcacctacaacagaatttaaaatacataagatttcaaaagattcactc 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | | | ||||||||||||||||    
T  28880760 ataagaacactaaccgtttcatatggattgacaccactaactcctgcattgttcacctacaacagaatttagaatacctcata-ttcaaaagattcactc 28880662  T
Q  210 gtataaaact-aaggataacaaaaaagctggcttgtcatgttctttactttttgt 263  Q
     ||||||||| |||||||| ||| ||| |||| || |||||  ||||||||||||    
T  28880661 atataaaactaaaggataataaagaagatggcatgccatgtcttttactttttgt 28880607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 42 - 109
Target Start/End: Complemental strand, 28885563 - 28885496
Alignment:
Q  42 acttactactccctccgtccttatatgtaagcacccttttattagaggaaaatggtgcttacatatag 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28885563 acttactactccctccgtccttatatgtaagcacccttttattagaggaaaatggtgcttacatatag 28885496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 46 - 109
Target Start/End: Complemental strand, 19989156 - 19989093
Alignment:
Q  46 actactccctccgtccttatatgtaagcacccttttattagaggaaaatggtgcttacatatag 109  Q
    |||||| ||||||||| ||||| |||||||| |||||||||||| |||||||||||||||||||    
T  19989156 actacttcctccgtccctatatctaagcaccattttattagaggcaaatggtgcttacatatag 19989093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 47 - 110
Target Start/End: Original strand, 32553682 - 32553745
Alignment:
Q  47 ctactccctccgtccttatatgtaagcacccttttattagaggaaaatggtgcttacatataga 110  Q
    ||||||||||||||| ||||||||| ||||||||||||||||  ||||| || |||||||||||    
T  32553682 ctactccctccgtccctatatgtaaacacccttttattagagacaaatgatgtttacatataga 32553745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 109
Target Start/End: Complemental strand, 31448439 - 31448378
Alignment:
Q  48 tactccctccgtccttatatgtaagcacccttttattagaggaaaatggtgcttacatatag 109  Q
    ||||| |||||||| ||||| ||||||||||||||||||| | ||| |||||||||||||||    
T  31448439 tactctctccgtccctatatctaagcacccttttattagatgcaaagggtgcttacatatag 31448378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 63 - 109
Target Start/End: Complemental strand, 5516362 - 5516316
Alignment:
Q  63 tatatgtaagcacccttttattagaggaaaatggtgcttacatatag 109  Q
    |||||||||||||| |||||||| ||| |||||||||||||||||||    
T  5516362 tatatgtaagcaccattttattaaaggtaaatggtgcttacatatag 5516316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 48 - 109
Target Start/End: Original strand, 9077525 - 9077586
Alignment:
Q  48 tactccctccgtccttatatgtaagcacccttttattagaggaaaatggtgcttacatatag 109  Q
    ||||| |||||||||||||| ||||||| ||||||||||||| |||  ||| ||||||||||    
T  9077525 tactctctccgtccttatatttaagcactcttttattagagggaaagagtgtttacatatag 9077586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 361
Target Start/End: Complemental strand, 28880590 - 28880489
Alignment:
Q  262 gtgatatcataaaacttattattattttgccatctat--tatagacagcttagggaagtgtgtcatgatctatcgtgaactgatacttgaaaatcgtttg 359  Q
    |||||||||||||||||  |  |||||||||||||||  ||||| || |||||| |||| | ||||||||||  ||| | ||||||||| |||||| |||    
T  28880590 gtgatatcataaaacttggtgctattttgccatctattatataggcaacttaggaaagtatctcatgatctacggtggattgatacttgtaaatcgattg 28880491  T
Q  360 aa 361  Q
    ||    
T  28880490 aa 28880489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 108
Target Start/End: Complemental strand, 11575516 - 11575456
Alignment:
Q  48 tactccctccgtccttatatgtaagcacccttttattagaggaaaatggtgcttacatata 108  Q
    ||||| |||||||| ||||| |||||| | |||||||||||| |||  |||||||||||||    
T  11575516 tactctctccgtccctatatctaagcatcattttattagaggcaaaatgtgcttacatata 11575456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 48 - 109
Target Start/End: Original strand, 33810617 - 33810678
Alignment:
Q  48 tactccctccgtccttatatgtaagcacccttttattagaggaaaatggtgcttacatatag 109  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||    
T  33810617 tactcccttcgtccctatatgtaagcacccttttattagaggaaaattgtgcttacatatag 33810678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 48 - 110
Target Start/End: Complemental strand, 19246557 - 19246494
Alignment:
Q  48 tactccctccgtccttatatgtaagcac-ccttttattagaggaaaatggtgcttacatataga 110  Q
    |||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||    
T  19246557 tactccctccgtccttatatctaagcacaccttttattagaggaaaatgatgcttacatataga 19246494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 48 - 109
Target Start/End: Complemental strand, 9154210 - 9154149
Alignment:
Q  48 tactccctccgtccttatatgtaagcacccttttattagaggaaaatggtgcttacatatag 109  Q
    |||||||||||||| ||||| ||||||||||||||||||||||||| |||| ||||||||||    
T  9154210 tactccctccgtccctatatctaagcacccttttattagaggaaaagggtggttacatatag 9154149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 48 - 109
Target Start/End: Original strand, 12457018 - 12457079
Alignment:
Q  48 tactccctccgtccttatatgtaagcacccttttattagaggaaaatggtgcttacatatag 109  Q
    |||||||||||||| ||||| ||||||||||||||||||||| ||| |||||||||||||||    
T  12457018 tactccctccgtccctatatctaagcacccttttattagaggcaaagggtgcttacatatag 12457079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 48 - 105
Target Start/End: Original strand, 12890265 - 12890322
Alignment:
Q  48 tactccctccgtccttatatgtaagcacccttttattagaggaaaatggtgcttacat 105  Q
    |||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||    
T  12890265 tactccctccgtccctatatctaagcatccttttattagaggaaaatggtgcttacat 12890322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 48 - 109
Target Start/End: Original strand, 38985126 - 38985187
Alignment:
Q  48 tactccctccgtccttatatgtaagcacccttttattagaggaaaatggtgcttacatatag 109  Q
    |||||||||||||| ||||| ||||||| ||||||||||||| |||||||||||| ||||||    
T  38985126 tactccctccgtccctatatataagcactcttttattagagggaaatggtgcttatatatag 38985187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 51 - 110
Target Start/End: Original strand, 14949237 - 14949296
Alignment:
Q  51 tccctccgtccttatatgtaagcacccttttattagaggaaaatggtgcttacatataga 110  Q
    ||||||||||| || || ||||||| ||||||||||||| ||||||||||||||||||||    
T  14949237 tccctccgtccctacatctaagcactcttttattagaggcaaatggtgcttacatataga 14949296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 48 - 110
Target Start/End: Complemental strand, 39028837 - 39028775
Alignment:
Q  48 tactccctccgtccttatatgtaagcacccttttattagaggaaaatggtgcttacatataga 110  Q
    |||||||||||||| |||||  |||||||||||| ||||| | ||||||||||||||||||||    
T  39028837 tactccctccgtccctatatcaaagcacccttttgttagatgcaaatggtgcttacatataga 39028775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 63 - 109
Target Start/End: Complemental strand, 43939497 - 43939451
Alignment:
Q  63 tatatgtaagcacccttttattagaggaaaatggtgcttacatatag 109  Q
    ||||| ||||||||||||||||||||| |||| ||||||||||||||    
T  43939497 tatatctaagcacccttttattagaggcaaatagtgcttacatatag 43939451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 108
Target Start/End: Complemental strand, 36887396 - 36887336
Alignment:
Q  48 tactccctccgtccttatatgtaagcacccttttattagaggaaaatggtgcttacatata 108  Q
    |||||||||||||| ||||||||| |||| |||||||| |||||||   ||||||||||||    
T  36887396 tactccctccgtccctatatgtaaacaccattttattataggaaaaaaatgcttacatata 36887336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 89
Target Start/End: Complemental strand, 19477249 - 19477208
Alignment:
Q  48 tactccctccgtccttatatgtaagcacccttttattagagg 89  Q
    |||||| ||||||| ||||| |||||||||||||||||||||    
T  19477249 tactccatccgtccctatatctaagcacccttttattagagg 19477208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 109
Target Start/End: Complemental strand, 21924895 - 21924850
Alignment:
Q  64 atatgtaagcacccttttattagaggaaaatggtgcttacatatag 109  Q
    |||| ||||||||||||||||||||| ||| |||||||| ||||||    
T  21924895 atatttaagcacccttttattagaggtaaaaggtgcttatatatag 21924850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 6e-19; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 48 - 108
Target Start/End: Complemental strand, 38125659 - 38125599
Alignment:
Q  48 tactccctccgtccttatatgtaagcacccttttattagaggaaaatggtgcttacatata 108  Q
    |||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||    
T  38125659 tactccctccgtccctatatgtaagcacccttttattagaggcaaaaggtgcttacatata 38125599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 48 - 110
Target Start/End: Complemental strand, 13481381 - 13481319
Alignment:
Q  48 tactccctccgtccttatatgtaagcacccttttattagaggaaaatggtgcttacatataga 110  Q
    |||||||||||||||||||| ||| | || |||||||||||| ||||||||||||||||||||    
T  13481381 tactccctccgtccttatatttaaactccattttattagaggtaaatggtgcttacatataga 13481319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 48 - 109
Target Start/End: Complemental strand, 15196575 - 15196514
Alignment:
Q  48 tactccctccgtccttatatgtaagcacccttttattagaggaaaatggtgcttacatatag 109  Q
    |||||||||||||| ||||| ||||||||||||||||||| ||||| | |||||||||||||    
T  15196575 tactccctccgtccctatatctaagcacccttttattagaagaaaaagatgcttacatatag 15196514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 63 - 106
Target Start/End: Original strand, 6438224 - 6438267
Alignment:
Q  63 tatatgtaagcacccttttattagaggaaaatggtgcttacata 106  Q
    ||||||||||||||||||||||||||  ||||||||||||||||    
T  6438224 tatatgtaagcacccttttattagagataaatggtgcttacata 6438267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 106
Target Start/End: Original strand, 1673900 - 1673958
Alignment:
Q  48 tactccctccgtccttatatgtaagcacccttttattagaggaaaatggtgcttacata 106  Q
    |||||||||||||||| ||| ||||||||||||||| ||| | ||| ||||||||||||    
T  1673900 tactccctccgtccttgtatctaagcacccttttatcagatgcaaaaggtgcttacata 1673958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 109
Target Start/End: Complemental strand, 24802623 - 24802569
Alignment:
Q  55 tccgtccttatatgtaagcacccttttattagaggaaaatggtgcttacatatag 109  Q
    ||||||| ||||| ||||||||||||||||||| | ||| |||||||||||||||    
T  24802623 tccgtccctatatctaagcacccttttattagatgcaaaaggtgcttacatatag 24802569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 48 - 109
Target Start/End: Original strand, 36430424 - 36430485
Alignment:
Q  48 tactccctccgtccttatatgtaagcacccttttattagaggaaaatggtgcttacatatag 109  Q
    |||| ||||||||| ||||| ||||||||||||||||||||| |  | ||||||||||||||    
T  36430424 tacttcctccgtccctatatttaagcacccttttattagaggcaccttgtgcttacatatag 36430485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 48 - 109
Target Start/End: Complemental strand, 32564904 - 32564843
Alignment:
Q  48 tactccctccgtccttatatgtaagcacccttttattagaggaaaatggtgcttacatatag 109  Q
    |||||||||||||| ||||||||||||||||||||||||||| |||  ||||||||||||||    
T  32564904 tactccctccgtccctatatgtaagcacccttttattagaggcaaagagtgcttacatatag 32564843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 48 - 110
Target Start/End: Complemental strand, 44302450 - 44302388
Alignment:
Q  48 tactccctccgtccttatatgtaagcacccttttattagaggaaaatggtgcttacatataga 110  Q
    |||| ||||||| ||||||| ||||||||||||||||||||||||| | |||||| |||||||    
T  44302450 tacttcctccgttcttatatttaagcacccttttattagaggaaaaagatgcttagatataga 44302388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 108
Target Start/End: Complemental strand, 42576992 - 42576932
Alignment:
Q  48 tactccctccgtccttatatgtaagcacccttttattagaggaaaatggtgcttacatata 108  Q
    |||||||||||| | ||||| |||||||| |||||||||||| |||| ||||||| |||||    
T  42576992 tactccctccgttcctatatctaagcaccattttattagaggcaaattgtgcttatatata 42576932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 58 - 109
Target Start/End: Complemental strand, 4473123 - 4473072
Alignment:
Q  58 gtccttatatgtaagcacccttttattagaggaaaatggtgcttacatatag 109  Q
    |||| |||||||||||||| |||||||||||| |||  ||||||||||||||    
T  4473123 gtccctatatgtaagcacctttttattagaggcaaagagtgcttacatatag 4473072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 77
Target Start/End: Complemental strand, 12624946 - 12624914
Alignment:
Q  45 tactactccctccgtccttatatgtaagcaccc 77  Q
    ||||||||||||||||| |||||||||||||||    
T  12624946 tactactccctccgtccctatatgtaagcaccc 12624914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 84
Target Start/End: Original strand, 50438172 - 50438208
Alignment:
Q  48 tactccctccgtccttatatgtaagcacccttttatt 84  Q
    |||||||||||||| ||||||||| ||||||||||||    
T  50438172 tactccctccgtccctatatgtaatcacccttttatt 50438208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 48 - 108
Target Start/End: Original strand, 16725021 - 16725081
Alignment:
Q  48 tactccctccgtccttatatgtaagcacccttttattagaggaaaatggtgcttacatata 108  Q
    |||||||| |||| |||||||||||||||||||||||||||| ||||| ||||||||||||    
T  16725021 tactcccttcgtctttatatgtaagcacccttttattagaggcaaatgatgcttacatata 16725081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 109
Target Start/End: Original strand, 9475083 - 9475144
Alignment:
Q  48 tactccctccgtccttatatgtaagcacccttttattagaggaaaatggtgcttacatatag 109  Q
    ||||||||| |||||||||| |||||||| ||||||| |||| ||| |||||||||||||||    
T  9475083 tactccctctgtccttatatataagcaccattttattcgaggcaaaaggtgcttacatatag 9475144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 48 - 108
Target Start/End: Complemental strand, 8564969 - 8564909
Alignment:
Q  48 tactccctccgtccttatatgtaagcacccttttattagaggaaaatggtgcttacatata 108  Q
    |||||||||||||| |||||||||||||| |||||||||| |||||   ||||||||||||    
T  8564969 tactccctccgtccctatatgtaagcacctttttattagaagaaaaaaatgcttacatata 8564909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 48 - 107
Target Start/End: Original strand, 28601930 - 28601989
Alignment:
Q  48 tactccctccgtccttatatgtaagcacccttttattagaggaaaatggtgcttacatat 107  Q
    |||| ||||||| ||||||| ||||||||||||||||||||  |||||||||||| ||||    
T  28601930 tacttcctccgttcttatatctaagcacccttttattagagataaatggtgcttatatat 28601989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 102
Target Start/End: Complemental strand, 30264625 - 30264571
Alignment:
Q  48 tactccctccgtccttatatgtaagcacccttttattagaggaaaatggtgctta 102  Q
    |||||||||||||| ||||| ||||||| ||||||||||||| ||||| ||||||    
T  30264625 tactccctccgtccctatatctaagcactcttttattagaggcaaatgatgctta 30264571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 88
Target Start/End: Original strand, 8911751 - 8911791
Alignment:
Q  48 tactccctccgtccttatatgtaagcacccttttattagag 88  Q
    |||||| ||| ||||||||||||||||||||||||||||||    
T  8911751 tactccttccatccttatatgtaagcacccttttattagag 8911791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 108
Target Start/End: Complemental strand, 21743091 - 21743029
Alignment:
Q  46 actactccctccgtccttatatgtaagcacccttttattagaggaaaatggtgcttacatata 108  Q
    |||||| | ||||||| ||||| ||||||| ||||||||||||| |||  |||||||||||||    
T  21743091 actacttcatccgtccctatatctaagcactcttttattagaggcaaagagtgcttacatata 21743029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 106
Target Start/End: Original strand, 41328615 - 41328653
Alignment:
Q  68 gtaagcacccttttattagaggaaaatggtgcttacata 106  Q
    |||||||||||||||||||||| ||| ||||||||||||    
T  41328615 gtaagcacccttttattagagggaaagggtgcttacata 41328653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 109
Target Start/End: Original strand, 3103152 - 3103213
Alignment:
Q  48 tactccctccgtccttatatgtaagcacccttttattagaggaaaatggtgcttacatatag 109  Q
    |||||| ||||| | ||||| ||| ||||||||||||||||| ||| |||||||| ||||||    
T  3103152 tactccatccgttcctatatataaacacccttttattagaggtaaagggtgcttatatatag 3103213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 80
Target Start/End: Original strand, 21743013 - 21743046
Alignment:
Q  47 ctactccctccgtccttatatgtaagcacccttt 80  Q
    ||||||||||||||||||||||||||||| ||||    
T  21743013 ctactccctccgtccttatatgtaagcactcttt 21743046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 48 - 109
Target Start/End: Complemental strand, 59475 - 59414
Alignment:
Q  48 tactccctccgtccttatatgtaagcacccttttattagaggaaaatggtgcttacatatag 109  Q
    |||||||||| ||| ||||||||||||||||||||||||||| |||| ||||||| ||||||    
T  59475 tactccctccatccctatatgtaagcacccttttattagagggaaattgtgcttatatatag 59414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 49 - 109
Target Start/End: Complemental strand, 7255208 - 7255148
Alignment:
Q  49 actccctccgtccttatatgtaagcacccttttattagaggaaaatggtgcttacatatag 109  Q
    ||||||||||| | ||||||||||||||||||||||||||| |||  ||||||||||||||    
T  7255208 actccctccgttcctatatgtaagcacccttttattagagggaaaatgtgcttacatatag 7255148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 55 - 109
Target Start/End: Complemental strand, 6951105 - 6951051
Alignment:
Q  55 tccgtccttatatgtaagcacccttttattagaggaaaatggtgcttacatatag 109  Q
    ||||||||||||| ||||||||||||||||||||| |||  ||||||||||||||    
T  6951105 tccgtccttatatctaagcacccttttattagaggcaaagtgtgcttacatatag 6951051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 109
Target Start/End: Original strand, 11248643 - 11248704
Alignment:
Q  48 tactccctccgtccttatatgtaagcacccttttattagaggaaaatggtgcttacatatag 109  Q
    |||| ||||||||| ||||| |||||||  |||||||||||| |||||||||||||||||||    
T  11248643 tacttcctccgtccctatatctaagcactattttattagaggcaaatggtgcttacatatag 11248704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 48 - 108
Target Start/End: Complemental strand, 46836452 - 46836392
Alignment:
Q  48 tactccctccgtccttatatgtaagcacccttttattagaggaaaatggtgcttacatata 108  Q
    |||||| ||||||| ||||| ||||||||||||||||||||| |||  |||||||||||||    
T  46836452 tactccttccgtccctatatctaagcacccttttattagaggcaaaatgtgcttacatata 46836392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 105
Target Start/End: Complemental strand, 43325737 - 43325687
Alignment:
Q  55 tccgtccttatatgtaagcacccttttattagaggaaaatggtgcttacat 105  Q
    ||||||| ||||||||||||| |||||||||||| |||||| |||||||||    
T  43325737 tccgtccctatatgtaagcactcttttattagagaaaaatgatgcttacat 43325687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 48 - 103
Target Start/End: Original strand, 6380151 - 6380206
Alignment:
Q  48 tactccctccgtccttatatgtaagcacccttttattagaggaaaatggtgcttac 103  Q
    |||||||||| ||| ||||| ||||||||||||||||||||  ||| |||||||||    
T  6380151 tactccctccatccctatatctaagcacccttttattagagacaaaaggtgcttac 6380206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 110
Target Start/End: Complemental strand, 31922916 - 31922854
Alignment:
Q  48 tactccctccgtccttatatgtaagcacccttttattagaggaaaatggtgcttacatataga 110  Q
    ||||| |||||||| ||||| ||||||||||||||||| ||| ||| | || |||||||||||    
T  31922916 tactctctccgtccctatatctaagcacccttttattaaaggcaaaagatgtttacatataga 31922854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 104
Target Start/End: Complemental strand, 25089364 - 25089319
Alignment:
Q  59 tccttatatgtaagcacccttttattagaggaaaatggtgcttaca 104  Q
    ||||||||| ||| ||||||||||||| ||| ||||||||||||||    
T  25089364 tccttatatctaaacacccttttattaaaggcaaatggtgcttaca 25089319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 109
Target Start/End: Complemental strand, 29058102 - 29058041
Alignment:
Q  48 tactccctccgtccttatatgtaagcacccttttattagaggaaaatggtgcttacatatag 109  Q
    |||||||| ||||||||||| |||||| | |||||||||||  ||||||| |||| ||||||    
T  29058102 tactcccttcgtccttatatataagcatctttttattagagacaaatggtacttatatatag 29058041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 49 - 108
Target Start/End: Complemental strand, 504665 - 504606
Alignment:
Q  49 actccctccgtccttatatgtaagcacccttttattagaggaaaatggtgcttacatata 108  Q
    ||||||||||||| |||||||||||||| |||||||||||  ||| ||||||||||||||    
T  504665 actccctccgtccctatatgtaagcacctttttattagagacaaaaggtgcttacatata 504606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 109
Target Start/End: Complemental strand, 42380626 - 42380565
Alignment:
Q  48 tactccctccgtccttatatgtaagcacccttttattagaggaaaatggtgcttacatatag 109  Q
    |||||||||||||| ||||| |||  |||||||||||||||| ||| |||||||||||||||    
T  42380626 tactccctccgtccctatatctaaaaacccttttattagaggcaaagggtgcttacatatag 42380565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 109
Target Start/End: Complemental strand, 42409340 - 42409279
Alignment:
Q  48 tactccctccgtccttatatgtaagcacccttttattagaggaaaatggtgcttacatatag 109  Q
    |||||||||||||| ||||| |||  |||||||||||||||| ||| |||||||||||||||    
T  42409340 tactccctccgtccctatatctaaaaacccttttattagaggcaaagggtgcttacatatag 42409279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 109
Target Start/End: Original strand, 33896660 - 33896714
Alignment:
Q  55 tccgtccttatatgtaagcacccttttattagaggaaaatggtgcttacatatag 109  Q
    ||||||| ||||| |||||||||||| |||||||| |||||||| ||||||||||    
T  33896660 tccgtccctatatataagcaccctttcattagaggcaaatggtgtttacatatag 33896714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 108
Target Start/End: Original strand, 25124710 - 25124755
Alignment:
Q  63 tatatgtaagcacccttttattagaggaaaatggtgcttacatata 108  Q
    ||||| ||||||||||||||||||||| ||||| |||||| |||||    
T  25124710 tatatataagcacccttttattagaggtaaatgatgcttatatata 25124755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 109
Target Start/End: Complemental strand, 42380797 - 42380736
Alignment:
Q  48 tactccctccgtccttatatgtaagcacccttttattagaggaaaatggtgcttacatatag 109  Q
    ||||||||| |||| ||||| |||  |||||||||||||||| ||| | |||||||||||||    
T  42380797 tactccctctgtccctatatctaataacccttttattagaggcaaaggatgcttacatatag 42380736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 109
Target Start/End: Complemental strand, 42409511 - 42409450
Alignment:
Q  48 tactccctccgtccttatatgtaagcacccttttattagaggaaaatggtgcttacatatag 109  Q
    ||||||||| |||| ||||| |||  |||||||||||||||| ||| | |||||||||||||    
T  42409511 tactccctctgtccctatatctaataacccttttattagaggcaaaggatgcttacatatag 42409450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 48 - 109
Target Start/End: Original strand, 143351 - 143412
Alignment:
Q  48 tactccctccgtccttatatgtaagcacccttttattagaggaaaatggtgcttacatatag 109  Q
    |||| |||| |||| ||||||||| ||||||||||||||||| ||| | |||||||||||||    
T  143351 tacttcctctgtccctatatgtaaacacccttttattagaggcaaaggatgcttacatatag 143412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 48 - 109
Target Start/End: Complemental strand, 1520975 - 1520914
Alignment:
Q  48 tactccctccgtccttatatgtaagcacccttttattagaggaaaatggtgcttacatatag 109  Q
    ||||| |||| ||||||||| ||||||||||||||||||||| |||  ||||||| ||||||    
T  1520975 tactctctccatccttatatctaagcacccttttattagaggcaaagtgtgcttaaatatag 1520914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 109
Target Start/End: Complemental strand, 30416997 - 30416937
Alignment:
Q  49 actccctccgtccttatatgtaagcacccttttattagaggaaaatggtgcttacatatag 109  Q
    |||||||||| || |||||||||||| |||||||||||||| |||  || |||||||||||    
T  30416997 actccctccgcccctatatgtaagcatccttttattagaggcaaagagttcttacatatag 30416937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 63 - 110
Target Start/End: Original strand, 61588 - 61635
Alignment:
Q  63 tatatgtaagcacccttttattagaggaaaatggtgcttacatataga 110  Q
    ||||| |||| |||||||||||||||||||||||| |||| |||||||    
T  61588 tatatttaagtacccttttattagaggaaaatggtacttatatataga 61635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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