View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19250_low_8 (Length: 367)
Name: NF19250_low_8
Description: NF19250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19250_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 279; Significance: 1e-156; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 10 - 319
Target Start/End: Original strand, 34109198 - 34109512
Alignment:
| Q |
10 |
attatactatattaagaaattcttaatagaaatctttaagaaactcttaagaaatgttaatgagttgactatgttatgagctgactatgttattgagttg |
109 |
Q |
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| T |
34109198 |
attatactatattaagaaattcttaatagacatctttaagaaactcttgagaaatgttaatgagttgactatgttatgagctgactatgttattgagttg |
34109297 |
T |
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| Q |
110 |
actatgctatgagctttcacacttgtggtctcttttttcttaattcttaataaattctgccaaaaataatagatttctttaatctttaattcgaaacaat |
209 |
Q |
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| T |
34109298 |
actatgttatgagctttcacacttgtggtctcttttttcttaattcttaataaattctgccaaaaataatagatttctttaatctttaattcgaaacaat |
34109397 |
T |
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| Q |
210 |
actagacaagaatttcctagaaactgcattctcatattatattag-----tttcattgattggaagaaagaaaaacctagagaaatcattgaactgaaaa |
304 |
Q |
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| T |
34109398 |
actagacaagaatttccttgaaactgcattctcatattatattagtttcatttcattgattggaagaaagaaaaacctagagaaatcattgaactgaaaa |
34109497 |
T |
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| Q |
305 |
gtttcttcatcaaga |
319 |
Q |
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| T |
34109498 |
gtttcttcatcaaga |
34109512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 102 - 263
Target Start/End: Original strand, 34121148 - 34121314
Alignment:
| Q |
102 |
ttgagttgactatgctatgagcttt-cacacttgtg-gtctctttttt--cttaattcttaataaattctgccaaaaataa-tagatttctttaatcttt |
196 |
Q |
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| T |
34121148 |
ttgagttgactatgttatgtgcttttcacacttgtaagtctatttttttccttaattcttaagaaattctgccaaaaataaataaacatctttaatcttt |
34121247 |
T |
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| Q |
197 |
aattcgaaacaatactagacaagaatttcctagaaactgcattctcatattatattagtttcattga |
263 |
Q |
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| T |
34121248 |
cactactagcattattagacaagaatttcctagaagctaccttttcatattatattagtttcattga |
34121314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 314 - 349
Target Start/End: Original strand, 34109589 - 34109624
Alignment:
| Q |
314 |
tcaagaagggatgcaaccagtcacaaaccagatatc |
349 |
Q |
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| T |
34109589 |
tcaagaagggatgcaaccagtcacaaaccagatatc |
34109624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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