View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19251_high_11 (Length: 351)
Name: NF19251_high_11
Description: NF19251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19251_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 16 - 222
Target Start/End: Complemental strand, 6969815 - 6969609
Alignment:
| Q |
16 |
gaatgaacatgtggattcagattttgatcaaccaaaagggatcggtgacctataaaaatatctattaatacaaaagataaagggtacatcaatcccgagg |
115 |
Q |
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| T |
6969815 |
gaatgaacatgtggattcagattttgatcaaccaaaagggatcggtgacctataaaaatatctattaatacaaaagataaagggtacatcaatcccgagg |
6969716 |
T |
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| Q |
116 |
aatgaactaatgtatacatatatacaaatttaaagtgaatctatctacctagctaccctctctttttgttttcagctataagaataaaagtgcaaaatcg |
215 |
Q |
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| T |
6969715 |
aatgaactaatgtatacatatatacaaatttaaagtgaatctatctacctagctaccctctctttttgttttcagctataagaataaaagtgcaaaatcg |
6969616 |
T |
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| Q |
216 |
atttctg |
222 |
Q |
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||||||| |
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| T |
6969615 |
atttctg |
6969609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 250 - 339
Target Start/End: Complemental strand, 6969581 - 6969492
Alignment:
| Q |
250 |
ctactttagaaaaagaagggaatgtgattgagaaatggaatgttgttttataattcaaaaattgtttggtagaatgaagtgtattagtat |
339 |
Q |
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| T |
6969581 |
ctactttagaaaaagaagggaatgtgattgagaaatggaatgttgttttataattcaaaaattgtttggtagaatgaagtgtattagtat |
6969492 |
T |
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