View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19251_high_12 (Length: 336)

Name: NF19251_high_12
Description: NF19251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19251_high_12
NF19251_high_12
[»] chr4 (5 HSPs)
chr4 (95-173)||(56241621-56241699)
chr4 (237-304)||(56241775-56241843)
chr4 (47-94)||(56241545-56241592)
chr4 (9-49)||(56241475-56241515)
chr4 (193-228)||(56241710-56241745)


Alignment Details
Target: chr4 (Bit Score: 79; Significance: 7e-37; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 95 - 173
Target Start/End: Original strand, 56241621 - 56241699
Alignment:
Q  95 ggcaatttggtggttttcaaaaaccaaaccggttcaatcattaagcaaatagaagtggaattgcagtttaataatttga 173  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  56241621 ggcaatttggtggttttcaaaaaccaaaccggttcaatcattaagcaaatagaagtggaattgcagtttaataatttga 56241699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 237 - 304
Target Start/End: Original strand, 56241775 - 56241843
Alignment:
Q  237 aagaatcaataatgaagagctgg-tgacgtttaaggtgagaaagtgacttagtgtgttattgatatagc 304  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  56241775 aagaatcaataatgaagagctgggtgacgtttaaggtgagaaagtgacttagtgtgttattgatatagc 56241843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 47 - 94
Target Start/End: Original strand, 56241545 - 56241592
Alignment:
Q  47 aaaggaaaatattttatccatgtgtcatgttttatttcgataacggtt 94  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  56241545 aaaggaaaatattttatccatgtgtcatgttttatttcgataacggtt 56241592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 56241475 - 56241515
Alignment:
Q  9 agcaaaggactcactctctctagtttcttcttctgcacaaa 49  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  56241475 agcaaatgactcactctctctagtttcttcttctgcacaaa 56241515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 193 - 228
Target Start/End: Original strand, 56241710 - 56241745
Alignment:
Q  193 gaatctatctcacaaatcttgagtatgctatccatg 228  Q
    ||||||||||||||||||||||||||||| ||||||    
T  56241710 gaatctatctcacaaatcttgagtatgctctccatg 56241745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University