View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19251_high_4 (Length: 439)
Name: NF19251_high_4
Description: NF19251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19251_high_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 19 - 432
Target Start/End: Complemental strand, 8018089 - 8017663
Alignment:
| Q |
19 |
gtaacagcaggaaatctcatttcctaaagaaccccggttagttgtatcttcacgctatgcaatactgactcaactagaggtttgctaagtaccgcaaaaa |
118 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
8018089 |
gtaacagcaggaaatcacatttcctaaagaaccccgattagttgtatcttcacgctatgcaatactgacccaactagaggtt-gctaagtaccgcaaaaa |
8017991 |
T |
|
| Q |
119 |
agaggcttataattagaatttttaggtattttgtcatagaaagatgttcaat------------ttcgccctcgatttagtcataacttccgattgtttg |
206 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
|
|
| T |
8017990 |
agaggcttataattagaatttttaagtattttatcatagaaagatgttcaataaacacttcaattttgccctcgatttagtcataacttccgattgtttg |
8017891 |
T |
|
| Q |
207 |
tttttgtgtgtacaatttgagcggatagcaaccctgatcgacctttgtcaaccaggttagcaatttgtatgggtacatcgagcaaccatttcatggtatc |
306 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8017890 |
tttttgtgtgtaaaatttgagcggatagcaaccctgatcgacctttgtcaaccaggtcagcaatttgtatgggtacatcgagcaaccatttcatggtatc |
8017791 |
T |
|
| Q |
307 |
tttgttctaaagcaaatgttttatc-tttgagaacctaaagcaagagctttggtagcct-ctccttggtccgaacaggccttcatctagaggggaaaaaa |
404 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
8017790 |
tttgttctaaagcaaatgttttatcttttgagaacctaaagcaagagctttggtagcctcctccttggtccgaacaggccttcatcttgaggggaaaaaa |
8017691 |
T |
|
| Q |
405 |
cacgtgctttgatcatgacgttcatctc |
432 |
Q |
| |
|
||||||||||||||||||||||| |||| |
|
|
| T |
8017690 |
cacgtgctttgatcatgacgttcttctc |
8017663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University