View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19251_high_5 (Length: 422)
Name: NF19251_high_5
Description: NF19251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19251_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 408
Target Start/End: Original strand, 44954591 - 44954990
Alignment:
| Q |
1 |
atgatgaaaatgaagatgatgatgtgaccaaagtaaggtaatctcctcttccatgatgtgaagagggatgaaggaaaaggcaagtcatgaaggcaaaggg |
100 |
Q |
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| T |
44954591 |
atgatgaaaatgaagatgatgatgtgaccaaagtaaggtaatctcctcttccatgatgtgaagagggatgaaggaaaaggcaagtcatgaaggcaaaggg |
44954690 |
T |
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| Q |
101 |
aaggtaacgcctttcttccaggatcaattcatgtaacttagttatttatgtaacacacggattaatttcggtttattctcaaatatgtagtacnnnnnnn |
200 |
Q |
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| T |
44954691 |
aaggtaacgcctttcttccaggatcaattcatgtaacttagttatttatgtaacacacggattaatttcggtttattctcaaatatgtact--------t |
44954782 |
T |
|
| Q |
201 |
nnnnnnnnnnnnaaaacattaagtgcttgtgcggattgctatctatggtgattgcttatgttatgtttatttatcaaatttccttattgtgtttcatgta |
300 |
Q |
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| T |
44954783 |
ttgttttgttttaaaacatgaagtgcttgtgcggattgctatctatggtgattgcttatgttatgtttatttatcaaatttccttattgtgtttcatgta |
44954882 |
T |
|
| Q |
301 |
atttggaatcatttatgttattgtttctttttccacacatggtacatgtaatttggaatgtttgattggaactatttgttctaagtttctgatcatacga |
400 |
Q |
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| T |
44954883 |
atttggaatcatttatgttattgtttctttttccacacatggtacatgtaatttggaatgtttgattggaactatttgttctaagtttctgatcatacga |
44954982 |
T |
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