View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19251_high_8 (Length: 368)
Name: NF19251_high_8
Description: NF19251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19251_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 16 - 350
Target Start/End: Original strand, 29613200 - 29613534
Alignment:
| Q |
16 |
aacctatccgctcaaccaatcaaaaactgaagaatcttccgtttttaatgtttcttcattgtgttattaatgtgttcttacaacttcaggcacaactatc |
115 |
Q |
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| T |
29613200 |
aacctatccgtacaaccaatcaaaaactgaagaatcttcagtttttaatgtttcttcattgtgttattaatgtgctcttacaacttcaggcacaactatc |
29613299 |
T |
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| Q |
116 |
ttggatgctgttaaggaagctgtgggacatgacaccgaagttatatatgagaagtgtccatcaacagaattcatagaatgtaatgaattttcttttgcca |
215 |
Q |
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| T |
29613300 |
ttggatgctgttaaggaagctgtgggacatgacaccgaagttatatatgagaagtgtccatcaacagaattcatagaatgtaatgaattttcttttgcca |
29613399 |
T |
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| Q |
216 |
ttgttgctattggtgaagcaccctatgctgagtgtggaggtgacaataaagaacttgtgatcccatttaatggagctggaattgtagacataattgctga |
315 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29613400 |
ttgtcgctattggtgaagcaccctatgctgagtgtggaggtgacaataaagaacttgtgatcccatttaatggagctggaattgtagacataattgctga |
29613499 |
T |
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| Q |
316 |
taaaatcccaacacttgtgattctgatatctggaa |
350 |
Q |
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| T |
29613500 |
taaaatcccaacacttgtgattctaatatctggaa |
29613534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 56 - 350
Target Start/End: Complemental strand, 29580874 - 29580580
Alignment:
| Q |
56 |
gtttttaatgtttcttcattgtgttattaatgtgttcttacaacttcaggcacaactatcttggatgctgttaaggaagctgtgggacatgacaccgaag |
155 |
Q |
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| T |
29580874 |
gtttttaatgtttcttcattgtgttattaatgtgttcttacaacttcaggcacaactatcttggatgctgttaaggaagctgtgggacatgacaccgaag |
29580775 |
T |
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| Q |
156 |
ttatatatgagaagtgtccatcaacagaattcatagaatgtaatgaattttcttttgccattgttgctattggtgaagcaccctatgctgagtgtggagg |
255 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29580774 |
ttatatatgagaagtgtccatcaacagaattcatagaatgtaatgaattttcttttgccattgttgctattggtgaagcaccctatgctgagtgtggagg |
29580675 |
T |
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| Q |
256 |
tgacaataaagaacttgtgatcccatttaatggagctggaattgtagacataattgctgataaaatcccaacacttgtgattctgatatctggaa |
350 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
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| T |
29580674 |
tgacaataaagaacttgtgatcccatttaatggagctggaattgtagacatagtttctgataaaatcccaacacttgtgattctgatatctggaa |
29580580 |
T |
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