View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19251_low_10 (Length: 352)
Name: NF19251_low_10
Description: NF19251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19251_low_10 |
 | |
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| [»] chr8 (13 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 309; Significance: 1e-174; HSPs: 13)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 4 - 352
Target Start/End: Original strand, 36209969 - 36210317
Alignment:
| Q |
4 |
tttatcaaccttcatatgtttggataatgcctccgagcttgttgatgtgagcaatatcttgcaaccattatgatcttcaccaaaggggataccaatctct |
103 |
Q |
| |
|
||||| ||||||||| || |||||||| ||||| | ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36209969 |
tttatgaaccttcatttgcttggataaaacctccaaacttgtagatgtcagcaatatcttgcaaccattatgatcttcaccaaaggggataccaatctct |
36210068 |
T |
|
| Q |
104 |
cctaaattgagtcgaccatgaagatcatacattacaatcaggactgtttgcagctctttcatcttagcaaaaagaagatcagctctttctgcagttatca |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
36210069 |
cctaaattgagtcgaccatgaagatcatacattacaatcaggactgtttgcagctctttcatcttagcacaaagaagatcagctctttctgcagttatca |
36210168 |
T |
|
| Q |
204 |
ttcttttactattaccaaaacgcgtgcaaccagttgatacggctacatacgtcttatcattaaaattgagacctattgcattgccaatttctgtttgaat |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36210169 |
ttcttttactattaccaaaacgcgtgcaaccagttgatacggctacatacgtcttatcattaaaattgagacctattgcattgccaatttctgtttgaat |
36210268 |
T |
|
| Q |
304 |
ctttgtaatgtctggcttctttgtcacagttgttgtgacaatcttttgg |
352 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36210269 |
ctttgtaatgtctggcttctttgtcacagttgttgtgacaatcttttgg |
36210317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 12 - 342
Target Start/End: Original strand, 36213319 - 36213649
Alignment:
| Q |
12 |
ccttcatatgtttggataatgcctccgagcttgttgatgtgagcaatatcttgcaaccattatgatcttcaccaaaggggataccaatctctcctaaatt |
111 |
Q |
| |
|
||||||| || |||||||| ||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
36213319 |
ccttcatttgattggataaaacctccacacttgtagatgtgagtaatatcttgcaaccattatgatcttcaccaaaggggacaccaatctcacctaaatc |
36213418 |
T |
|
| Q |
112 |
gagtcgaccatgaagatcatacattacaatcaggactgtttgcagctctttcatcttagcaaaaagaagatcagctctttctgcagttatcattctttta |
211 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||| ||| | ||||| |
|
|
| T |
36213419 |
gagtctcccatgaagatcatacattacaatcaggactgtttgcagctctttcatcttagcacaaataagatgagctctttctgcagttgtcactgtttta |
36213518 |
T |
|
| Q |
212 |
ctattaccaaaacgcgtgcaaccagttgatacggctacatacgtcttatcattaaaattgagacctattgcattgccaatttctgtttgaatctttgtaa |
311 |
Q |
| |
|
||||||||||||| | |||||| ||||||| ||||||||| | |||||||||||||||||||||||||||||| ||||||| |||||||||| |||||| |
|
|
| T |
36213519 |
ctattaccaaaacacatgcaacaagttgattcggctacattcatcttatcattaaaattgagacctattgcatcaccaatttgtgtttgaatcattgtaa |
36213618 |
T |
|
| Q |
312 |
tgtctggcttctttgtcacagttgttgtgac |
342 |
Q |
| |
|
|||||||||||||||||||||||| |||||| |
|
|
| T |
36213619 |
tgtctggcttctttgtcacagttgctgtgac |
36213649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 36184695 - 36185046
Alignment:
| Q |
1 |
cactttatcaaccttcatatgtttggataatgcctccgagcttgttgatgtgagcaatatcttgcaaccattatgatcttcaccaaaggggataccaatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36184695 |
cactttatcaaccttcatatgtttggataatgcctccgagcttgttgatgtgagcaatatcttgcaaccattatgatcttcaccaaaggggataccaatc |
36184794 |
T |
|
| Q |
101 |
tctcctaaattgagtcgaccatgaagatcatacattacaatcaggactgtttgcagctctttcatcttagcaaaaagaagatcagctctttctgcagtta |
200 |
Q |
| |
|
|| ||||||| |||| ||||||||||||| ||| ||||| || ||||||||||| || || |||||||| | |||||| |||||||||||||||| |
|
|
| T |
36184795 |
tcacctaaatcaagtctaccatgaagatcacacaatacaactagtactgtttgcagttcctttatcttagcgcacagaagaagagctctttctgcagttg |
36184894 |
T |
|
| Q |
201 |
tcattcttttactattaccaaaacgcgtgcaaccagttgatacggctacatacgtcttatcattaaaattgagacctattgcattgccaatttctgtttg |
300 |
Q |
| |
|
|||||||||| |||||||| ||| | ||||| || || | | | || || ||||||||| |||||| |||||||||||| | ||||| | |||||| |
|
|
| T |
36184895 |
tcattcttttgttattaccataacacacgcaacaagatgtttcagatagatcgatcttatcatcaaaattcagacctattgcaataccaatctgtgtttg |
36184994 |
T |
|
| Q |
301 |
aatctttgtaatgtctggcttctttgtcacagttgttgtgacaatcttttgg |
352 |
Q |
| |
|
|||||| |||||||||| ||||| |||||||||| |||||||||||||||| |
|
|
| T |
36184995 |
aatcttgctaatgtctggtttcttggtcacagttgctgtgacaatcttttgg |
36185046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 4 - 217
Target Start/End: Original strand, 36188536 - 36188749
Alignment:
| Q |
4 |
tttatcaaccttcatatgtttggataatgcctccgagcttgttgatgtgagcaatatcttgcaaccattatgatcttcaccaaaggggataccaatctct |
103 |
Q |
| |
|
||||| ||||||||| || | ||||| ||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36188536 |
tttatgaaccttcatttgctcagataaaacctccaaacttgtagatgtgagcaatatcttgcaaccattatgatcttcaccaaaggggataccaatctct |
36188635 |
T |
|
| Q |
104 |
cctaaattgagtcgaccatgaagatcatacattacaatcaggactgtttgcagctctttcatcttagcaaaaagaagatcagctctttctgcagttatca |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
36188636 |
cctaaattgagtcgaccatgaagatcatacattacaatcaggactgtttgcagctctttcatcttagcacaaagaagatcagctctttctgcagttatca |
36188735 |
T |
|
| Q |
204 |
ttcttttactatta |
217 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
36188736 |
ttcttttactatta |
36188749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 49 - 352
Target Start/End: Original strand, 36201070 - 36201373
Alignment:
| Q |
49 |
tgtgagcaatatcttgcaaccattatgatcttcaccaaaggggataccaatctctcctaaattgagtcgaccatgaagatcatacattacaatcaggact |
148 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||| | || ||||||||||||||||| ||||| |||||| |
|
|
| T |
36201070 |
tgtgagcaataccttgcaaccattatgatcttcaccaaaggggacaccaatctcccctaaatcaaatctaccatgaagatcatacagtacaactaggact |
36201169 |
T |
|
| Q |
149 |
gtttgcagctctttcatcttagcaaaaagaagatcagctctttctgcagttatcattcttttactattaccaaaacgcgtgcaaccagttgatacggcta |
248 |
Q |
| |
|
||||||||||| |||||||||||| ||| ||||| |||||| ||||||||| |||||||||||||||||||||||| | |||||| ||||||| ||| |
|
|
| T |
36201170 |
gtttgcagctccttcatcttagcacaaataagatgagctctatctgcagttgtcattcttttactattaccaaaacacatgcaacaagttgattttgctg |
36201269 |
T |
|
| Q |
249 |
catacgtcttatcattaaaattgagacctattgcattgccaatttctgtttgaatctttgtaatgtctggcttctttgtcacagttgttgtgacaatctt |
348 |
Q |
| |
|
| | |||| ||||||||||||||||||||||||||| ||||| | |||||||||||| |||||||||||||||| |||||||||| ||||||| |||| |
|
|
| T |
36201270 |
cctccgtcatatcattaaaattgagacctattgcatcaccaatctgtgtttgaatcttattaatgtctggcttcttggtcacagttgctgtgacagtctt |
36201369 |
T |
|
| Q |
349 |
ttgg |
352 |
Q |
| |
|
|||| |
|
|
| T |
36201370 |
ttgg |
36201373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 4 - 352
Target Start/End: Original strand, 36207882 - 36208230
Alignment:
| Q |
4 |
tttatcaaccttcatatgtttggataatgcctccgagcttgttgatgtgagcaatatcttgcaaccattatgatcttcaccaaaggggataccaatctct |
103 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36207882 |
tttatcaaccttcatatgtttggataaagcctccgagcttgtagatgtcagcaatatcttgcaaccattatgatcttcaccaaaggggataccaatctca |
36207981 |
T |
|
| Q |
104 |
cctaaattgagtcgaccatgaagatcatacattacaatcaggactgtttgcagctctttcatcttagcaaaaagaagatcagctctttctgcagttatca |
203 |
Q |
| |
|
||||||| |||| ||||||||||||||||| ||||| || ||||||||||| | || ||||||||| | |||||| |||||||||||||||| ||| |
|
|
| T |
36207982 |
cctaaatcaagtctaccatgaagatcatacagtacaactagtactgtttgcagtttctttatcttagcacacagaagaagagctctttctgcagttgtca |
36208081 |
T |
|
| Q |
204 |
ttcttttactattaccaaaacgcgtgcaaccagttgatacggctacatacgtcttatcattaaaattgagacctattgcattgccaatttctgtttgaat |
303 |
Q |
| |
|
||||||| |||||||| ||| | ||||| || || | | | || || ||||||||| |||||| |||||||||||| | ||||| | ||||||||| |
|
|
| T |
36208082 |
ttcttttgttattaccataacacacgcaacaagatgtttcagatagatcgatcttatcatcaaaattcagacctattgcaataccaatctgtgtttgaat |
36208181 |
T |
|
| Q |
304 |
ctttgtaatgtctggcttctttgtcacagttgttgtgacaatcttttgg |
352 |
Q |
| |
|
||| |||||||||| ||||| |||||||||| |||||||||||||||| |
|
|
| T |
36208182 |
cttgctaatgtctggtttcttggtcacagttgctgtgacaatcttttgg |
36208230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 4 - 352
Target Start/End: Original strand, 36196854 - 36197199
Alignment:
| Q |
4 |
tttatcaaccttcatatgtttggataatgcctccgagcttgttgatgtgagcaatatcttgcaaccattatgatcttcaccaaagggg---ataccaatc |
100 |
Q |
| |
|
||||| ||||||||| || | ||||| ||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
36196854 |
tttatgaaccttcatttgctcagataaaacctccaaacttgtagatgtgagcaatatcttgcaaccattatgatcttcaccaaagggggggataccaatc |
36196953 |
T |
|
| Q |
101 |
tctcctaaattgagtcgaccatgaagatcatacattacaatcaggactgtttgcagctctttcatcttagcaaaaagaagatcagctctttctgcagtta |
200 |
Q |
| |
|
|| ||||||| ||||| ||| |||||||||||| ||||| |||||||||||||||||||||||||||||| | | ||||| |||||||||||||||| |
|
|
| T |
36196954 |
tcacctaaatcgagtctcccacgaagatcatacagtacaactaggactgtttgcagctctttcatcttagcacacaaaagatgagctctttctgcagttg |
36197053 |
T |
|
| Q |
201 |
tcattcttttactattaccaaaacgcgtgcaaccagttgatacggctacatacgtcttatcattaaaattgagacctattgcattgccaatttctgtttg |
300 |
Q |
| |
|
||||||||| |||||||||||| | |||||| ||||||| | ||| || ||||||||||| ||||| ||||||||| |||||| |||||| |
|
|
| T |
36197054 |
ccattctttttctattaccaaaaaacatgcaacaagttgattcagctggatccgtcttatcatcaaaat------ctattgcatcaccaattagtgtttg |
36197147 |
T |
|
| Q |
301 |
aatctttgtaatgtctggcttctttgtcacagttgttgtgacaatcttttgg |
352 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
36197148 |
aatctttgtaatgtctggcttctttgtcacagttgctgtgacaatcttttgg |
36197199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 4 - 350
Target Start/End: Original strand, 36202410 - 36202756
Alignment:
| Q |
4 |
tttatcaaccttcatatgtttggataatgcctccgagcttgttgatgtgagcaatatcttgcaaccattatgatcttcaccaaaggggataccaatctct |
103 |
Q |
| |
|
||||| ||||||||| | ||||||||| ||||| | |||| ||||| ||||||||||||||||| |||||||||||||||||||| |||||||| || |
|
|
| T |
36202410 |
tttatgaaccttcatttctttggataaaacctccaaatttgtagatgtcagcaatatcttgcaacccttatgatcttcaccaaagggcataccaatttca |
36202509 |
T |
|
| Q |
104 |
cctaaattgagtcgaccatgaagatcatacattacaatcaggactgtttgcagctctttcatcttagcaaaaagaagatcagctctttctgcagttatca |
203 |
Q |
| |
|
| ||||| |||| |||||| |||||||||||||||| ||||||||||||||||| |||||||||||| | || ||| |||||||||||||||| | | |
|
|
| T |
36202510 |
cttaaatcaagtctaccatggagatcatacattacaactaggactgtttgcagctccttcatcttagcacacagtagaagagctctttctgcagttctta |
36202609 |
T |
|
| Q |
204 |
ttcttttactattaccaaaacgcgtgcaaccagttgatacggctacatacgtcttatcattaaaattgagacctattgcattgccaatttctgtttgaat |
303 |
Q |
| |
|
||||||| ||||||| || | |||||| | |||| | |||| || ||||||||| |||||| |||| |||||||| ||||||| ||||||||| |
|
|
| T |
36202610 |
ttcttttgttattaccgtaagacatgcaacaggatgattcagctagatcaatcttatcatcaaaattcagacatattgcatcaccaatttgtgtttgaat |
36202709 |
T |
|
| Q |
304 |
ctttgtaatgtctggcttctttgtcacagttgttgtgacaatctttt |
350 |
Q |
| |
|
|| |||||||||||||||||| ||||| |||| |||||||||||||| |
|
|
| T |
36202710 |
ctgtgtaatgtctggcttcttcgtcacggttgctgtgacaatctttt |
36202756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 42 - 284
Target Start/End: Original strand, 36199041 - 36199283
Alignment:
| Q |
42 |
ttgttgatgtgagcaatatcttgcaaccattatgatcttcaccaaaggggataccaatctctcctaaattgagtcgaccatgaagatcatacattacaat |
141 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||| ||||| ||||||||||| ||||| |
|
|
| T |
36199041 |
ttgtagatgtgagcaatatcttgcaaccattatgatcttcaccaaaggggataccaatcttacttaaatcaagtctaccataaagatcatacactacaac |
36199140 |
T |
|
| Q |
142 |
caggactgtttgcagctctttcatcttagcaaaaagaagatcagctctttctgcagttatcattcttttactattaccaaaacgcgtgcaaccagttgat |
241 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||||| ||||||||||| |||| ||| ||||||| ||||| |||||| | |||||| ||| ||| |
|
|
| T |
36199141 |
taggactgtttgcagctctttcatcttagcacacagaagaagagctctttctgtagttgtcaatcttttattattaacaaaacacatgcaacaagtagat |
36199240 |
T |
|
| Q |
242 |
acggctacatacgtcttatcattaaaattgagacctattgcat |
284 |
Q |
| |
|
| |||| || ||| |||||| |||||| ||||||||||||| |
|
|
| T |
36199241 |
tcagctatatctgtcgtatcatcaaaattcagacctattgcat |
36199283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 262 - 352
Target Start/End: Original strand, 36188746 - 36188836
Alignment:
| Q |
262 |
attaaaattgagacctattgcattgccaatttctgtttgaatctttgtaatgtctggcttctttgtcacagttgttgtgacaatcttttgg |
352 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
36188746 |
attaaaattgagacctattgcatagccaatttctgtttgaatctttgtaatgtctggcttctttgttacagttgttgtgacaatcttttgg |
36188836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 287 - 352
Target Start/End: Original strand, 36214838 - 36214903
Alignment:
| Q |
287 |
ccaatttctgtttgaatctttgtaatgtctggcttctttgtcacagttgttgtgacaatcttttgg |
352 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
36214838 |
ccaatttgtgtttgaatctttgtaatgtctggcttctttgtcacagttgctgtgacaatcttttgg |
36214903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 265 - 352
Target Start/End: Original strand, 36183542 - 36183629
Alignment:
| Q |
265 |
aaaattgagacctattgcattgccaatttctgtttgaatctttgtaatgtctggcttctttgtcacagttgttgtgacaatcttttgg |
352 |
Q |
| |
|
||||||||||||||||||| | ||||||| |||| |||||| ||||||||| |||||| ||||||||||| | ||| ||||||||| |
|
|
| T |
36183542 |
aaaattgagacctattgcaataccaatttgtgttcgaatctatgtaatgtcaagcttctatgtcacagttgctaagacgatcttttgg |
36183629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 321 - 352
Target Start/End: Original strand, 36199303 - 36199334
Alignment:
| Q |
321 |
tctttgtcacagttgttgtgacaatcttttgg |
352 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
36199303 |
tctttgtcacagttgttgtgacaatcttttgg |
36199334 |
T |
|
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