View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19251_low_12 (Length: 336)

Name: NF19251_low_12
Description: NF19251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19251_low_12
NF19251_low_12
[»] chr4 (5 HSPs)
chr4 (95-173)||(56241621-56241699)
chr4 (237-304)||(56241775-56241843)
chr4 (47-94)||(56241545-56241592)
chr4 (9-49)||(56241475-56241515)
chr4 (193-228)||(56241710-56241745)


Alignment Details
Target: chr4 (Bit Score: 79; Significance: 7e-37; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 95 - 173
Target Start/End: Original strand, 56241621 - 56241699
Alignment:
Q  95 ggcaatttggtggttttcaaaaaccaaaccggttcaatcattaagcaaatagaagtggaattgcagtttaataatttga 173  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  56241621 ggcaatttggtggttttcaaaaaccaaaccggttcaatcattaagcaaatagaagtggaattgcagtttaataatttga 56241699  T

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Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 237 - 304
Target Start/End: Original strand, 56241775 - 56241843
Alignment:
Q  237 aagaatcaataatgaagagctgg-tgacgtttaaggtgagaaagtgacttagtgtgttattgatatagc 304  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  56241775 aagaatcaataatgaagagctgggtgacgtttaaggtgagaaagtgacttagtgtgttattgatatagc 56241843  T

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Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 47 - 94
Target Start/End: Original strand, 56241545 - 56241592
Alignment:
Q  47 aaaggaaaatattttatccatgtgtcatgttttatttcgataacggtt 94  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  56241545 aaaggaaaatattttatccatgtgtcatgttttatttcgataacggtt 56241592  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 56241475 - 56241515
Alignment:
Q  9 agcaaaggactcactctctctagtttcttcttctgcacaaa 49  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  56241475 agcaaatgactcactctctctagtttcttcttctgcacaaa 56241515  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 193 - 228
Target Start/End: Original strand, 56241710 - 56241745
Alignment:
Q  193 gaatctatctcacaaatcttgagtatgctatccatg 228  Q
    ||||||||||||||||||||||||||||| ||||||    
T  56241710 gaatctatctcacaaatcttgagtatgctctccatg 56241745  T

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