View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19251_low_14 (Length: 333)
Name: NF19251_low_14
Description: NF19251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19251_low_14 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 319; Significance: 1e-180; HSPs: 12)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 323
Target Start/End: Complemental strand, 36210041 - 36209719
Alignment:
| Q |
1 |
tcataatggttgcaagatattgctgacatctacaagtttggaggttttatccaagcaaatgaaggttcataaattgataagagacatggcatgattctct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
36210041 |
tcataatggttgcaagatattgctgacatctacaagtttggaggttttatccaagcaaatgaaggttcataaattgataagagacatggcatgattttct |
36209942 |
T |
|
| Q |
101 |
tccaacaagagcgtttgtagcagagatgatgaaaatctgaagtcgaaacatgcacatcgtttggaaaacaccatgttggagagattagaggttgagaagt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36209941 |
tccaacaagagcgtttgtagcagagatgatgaaaatctgaagtcgaaacatgcacatcgtttggaaaacaccatgttggagagattagaggttgagaagt |
36209842 |
T |
|
| Q |
201 |
gctttgcagttatagatgaactaagattttgtattctgtcaaatgcttgtgtttgtattatgtccgatacatgtatccattatggtaagatttcccttgt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36209841 |
gctttgcagttatagatgaactaagattttgtattctgtcaaatgcttgtgtttgtattatgtccgatacatgtatccattatggtaagatttcccttgt |
36209742 |
T |
|
| Q |
301 |
ttcttgcagtaatttcctctgtg |
323 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
36209741 |
ttcttgcagtaatttcctctgtg |
36209719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 323
Target Start/End: Complemental strand, 36188608 - 36188278
Alignment:
| Q |
1 |
tcataatggttgcaagatattgctgacatctacaagtttggaggttttatccaagcaaatgaaggttcataaattgata--------agagacatggcat |
92 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||| |
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|
| T |
36188608 |
tcataatggttgcaagatattgctcacatctacaagtttggaggttttatctgagcaaatgaaggttcataaattgatacaattgtgagagacatgacat |
36188509 |
T |
|
| Q |
93 |
gattctcttccaacaagagcgtttgtagcagagatgatgaaaatctgaagtcgaaacatgcacatcgtttggaaaacaccatgttggagagattagaggt |
192 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36188508 |
gattctcttccaacaagagcgtttgtagcagagatgatgaaaatcataagtccaaacatgcacatcgtttggaaaacaccatgttggagagattagaggt |
36188409 |
T |
|
| Q |
193 |
tgagaagtgc-tttgcagttatagatgaactaagattttgtattctgtcaaatgcttgtgtttgtattatgtccgatacatgtatccattatggtaagat |
291 |
Q |
| |
|
|||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |
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|
| T |
36188408 |
tgagaagtgcttttgtaggtatagatgaactaagattttgtattctgtcaaatgcttgtgtttgtattatatccgagacatgtatccattatggtaagat |
36188309 |
T |
|
| Q |
292 |
ttcccttgtttcttgcagtaatttcctctgtg |
323 |
Q |
| |
|
||||||| |||||||||||||||||||||||| |
|
|
| T |
36188308 |
ttccctt-tttcttgcagtaatttcctctgtg |
36188278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 323
Target Start/End: Complemental strand, 36196926 - 36196595
Alignment:
| Q |
1 |
tcataatggttgcaagatattgctgacatctacaagtttggaggttttatccaagcaaatgaaggttcataaattgata--------agagacatggcat |
92 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||| |
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|
| T |
36196926 |
tcataatggttgcaagatattgctcacatctacaagtttggaggttttatctgagcaaatgaaggttcataaattgatacaattgtgagagacatgacat |
36196827 |
T |
|
| Q |
93 |
gattctcttccaacaagagcgtttgtagcagagatgatgaaaatctgaagtcgaaacatgcacatcgtttggaaaacaccatgttggagagattagaggt |
192 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36196826 |
gattctcttccaacaagagcgtttgtagcagagatgatgaaaatcataagtccaaacatgcacatcgtttggaaaacaccatgttggagagattagaggt |
36196727 |
T |
|
| Q |
193 |
tgagaagtgc-tttgcagttatagatgaactaagattttgtattctgtcaaatgcttgtgtttgtattatgtccgatacatgtatccattatggtaagat |
291 |
Q |
| |
|
|||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
36196726 |
tgagaagtgcttttgtaggtatagatgaactaagattttgtattctgtcaaatgcttgtgtttgtattatatccgagacatgtatccattatggtaagat |
36196627 |
T |
|
| Q |
292 |
ttcccttgtttcttgcagtaatttcctctgtg |
323 |
Q |
| |
|
||||| ||||||||||||||||||| |||||| |
|
|
| T |
36196626 |
ttcccctgtttcttgcagtaatttcgtctgtg |
36196595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 36207954 - 36207688
Alignment:
| Q |
1 |
tcataatggttgcaagatattgctgacatctacaagtttggaggttttatccaagcaaatgaaggttcataaattgata--------agagacatggcat |
92 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | ||||| ||||||||| || ||||||||| ||||||| ||| ||||||||| ||| |
|
|
| T |
36207954 |
tcataatggttgcaagatattgctgacatctacaagctcggaggctttatccaaacatatgaaggttgataaattaatacaattatcagagacatgacat |
36207855 |
T |
|
| Q |
93 |
gatt-ctcttccaacaagagcgtttgtagcagagatgatgaaaatctgaagtcgaaacatgcacatcgtttggaaaacaccatgttggagagattagagg |
191 |
Q |
| |
|
|||| |||||||||| || | ||| | || |||| |||||||||| ||||||| ||||||||||||| | | |||||||||||||||||||||||||||| |
|
|
| T |
36207854 |
gatttctcttccaaccagtgtgttagaagtagagttgatgaaaatttgaagtccaaacatgcacatcatatcgaaaacaccatgttggagagattagagg |
36207755 |
T |
|
| Q |
192 |
ttgagaagtgctttgcagttatagatgaactaagattttg-tattctgtcaaatgcttgtgtttgta |
257 |
Q |
| |
|
|| | | ||| |||| ||| || |||||||||||||||| | |||||| ||||||||||| ||||| |
|
|
| T |
36207754 |
ttcacatgtgatttgttgttgtatatgaactaagattttgtttttctgttaaatgcttgtgcttgta |
36207688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 36202482 - 36202310
Alignment:
| Q |
1 |
tcataatggttgcaagatattgctgacatctacaagtttggaggttttatccaagcaaatgaaggttcataaattgata--------agagacatggcat |
92 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||| || |
|
|
| T |
36202482 |
tcataagggttgcaagatattgctgacatctacaaatttggaggttttatccaaagaaatgaaggttcataaattgatacaattgtcagagacatgaaat |
36202383 |
T |
|
| Q |
93 |
gattctcttccaacaagagcgtttgtagcagagatgatgaaaatctgaagtcgaaacatgcacatcgtttgga |
165 |
Q |
| |
|
|| ||||||| || |||||||||| |||||||||||||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
36202382 |
gaatctcttcttactagagcgtttgaagcagagatgatgaaaatctgaagtcgaaacatgaacatagtttgga |
36202310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 36184770 - 36184500
Alignment:
| Q |
1 |
tcataatggttgcaagatattgctgacatctacaagtttggaggttttatccaagcaaatgaaggttcataaattgata--------agagacatggcat |
92 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||| | ||||| |||||||| || ||||||||| ||||| ||||| ||||||||| ||| |
|
|
| T |
36184770 |
tcataatggttgcaagatattgctcacatcaacaagctcggaggcattatccaaacatatgaaggttgataaagtgatacaattatcagagacatgacat |
36184671 |
T |
|
| Q |
93 |
gattct-cttccaacaagagcgtttgtagcagagatgatgaaaatctgaagtcgaaacatgcacatcgtttggaaaacaccatgttggagagatt----a |
187 |
Q |
| |
|
|||| | |||||||| |||| ||| | ||||||| |||||||||||||||||| ||||||| | ||| | |||| ||||||||||||||||||| | |
|
|
| T |
36184670 |
gatttttcttccaactagagtgttagaagcagagttgatgaaaatctgaagtccaaacatgaatatcatacggaagacaccatgttggagagattagaga |
36184571 |
T |
|
| Q |
188 |
gaggttgagaagtgctttgcagttatagatgaactaagattttg-tattctgtcaaatgcttgtgtttgta |
257 |
Q |
| |
|
|||||| | |||||||||| ||| ||||||||||||||||||| | |||||| ||||||||||| ||||| |
|
|
| T |
36184570 |
gaggttcacaagtgctttgttgttgtagatgaactaagattttgtttttctgttaaatgcttgtgcttgta |
36184500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 36213383 - 36213218
Alignment:
| Q |
1 |
tcataatggttgcaagatattgctgacatctacaagtttggaggttttatccaagcaaatgaaggttcataaattg--------ataagagacatggcat |
92 |
Q |
| |
|
||||||||||||||||||||| || |||||||||||| |||||||||||||||| |||||||||| |||||||||| || ||||||||| ||| |
|
|
| T |
36213383 |
tcataatggttgcaagatattactcacatctacaagtgtggaggttttatccaatcaaatgaaggctcataaattgattcaattatcagagacatgacat |
36213284 |
T |
|
| Q |
93 |
gattctcttccaacaagagcgtttgtagcagagatgatgaaaatctgaagtcgaaacatgcacatc |
158 |
Q |
| |
|
|||||||||| ||| | || ||||| ||||||| |||| ||||| ||||||| ||||||||||||| |
|
|
| T |
36213283 |
gattctcttcaaactaaagtgtttgaagcagagttgataaaaatttgaagtccaaacatgcacatc |
36213218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 36201097 - 36200857
Alignment:
| Q |
1 |
tcataatggttgcaagatattgctgacatctacaagtttggaggttttatccaagcaaatgaaggttcataaattg--------ataagagacatggcat |
92 |
Q |
| |
|
|||||||||||||||| ||||||| ||| ||| |||| |||||||||||||| | ||||||| |||||||||||| || ||||||||| || |
|
|
| T |
36201097 |
tcataatggttgcaaggtattgctcacacctaaaagtgtggaggttttatccgaacaaatgacagttcataaattgacacagttatcagagacatgatat |
36200998 |
T |
|
| Q |
93 |
ga-ttctcttccaacaagagcgtttgtagcagagatgatgaaaatctgaagtcgaaacatgcacatcgtttggaaaacaccatgttggagagattagagg |
191 |
Q |
| |
|
|| |||| |||| || ||| ||||| ||||||| ||| ||||| || ||| ||||||||||||| | |||||| ||||||||||||| |||||| || |
|
|
| T |
36200997 |
gatttcttttcctactagactgtttgaagcagagttgacgaaaacttgtagttcaaacatgcacatcatatggaaagcaccatgttggagtgattagtgg |
36200898 |
T |
|
| Q |
192 |
ttgagaagtgctttgcagttatagatgaactaagattttgt |
232 |
Q |
| |
|
|||| | ||||| || | | |||||||||||||||||||| |
|
|
| T |
36200897 |
ttgacaggtgctgtgttggtgtagatgaactaagattttgt |
36200857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 120 - 231
Target Start/End: Complemental strand, 36214833 - 36214722
Alignment:
| Q |
120 |
gcagagatgatgaaaatctgaagtcgaaacatgcacatcgtttggaaaacaccatgttggagagattagaggttgagaagtgctttgcagttatagatga |
219 |
Q |
| |
|
||||||||| ||||||| ||||||| |||||||||| | |||||||||||| ||||||| |||||||||| |||| |||||||||| | ||||||| | |
|
|
| T |
36214833 |
gcagagatggtgaaaatttgaagtccaaacatgcactttatttggaaaacacaatgttggggagattagagattgacaagtgctttgttggtatagatca |
36214734 |
T |
|
| Q |
220 |
actaagattttg |
231 |
Q |
| |
|
| ||||| |||| |
|
|
| T |
36214733 |
attaagactttg |
36214722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 138 - 220
Target Start/End: Complemental strand, 36198960 - 36198878
Alignment:
| Q |
138 |
tgaagtcgaaacatgcacatcgtttggaaaacaccatgttggagagattagaggttgagaagtgctttgcagttatagatgaa |
220 |
Q |
| |
|
||||||| ||||||||||||| |||||||||||| |||||||||||||||||| ||| ||||||||| || |||||||||| |
|
|
| T |
36198960 |
tgaagtctaaacatgcacatcctttggaaaacacaatgttggagagattagagattggtaagtgctttttaggtatagatgaa |
36198878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 36199075 - 36198991
Alignment:
| Q |
1 |
tcataatggttgcaagatattgctgacatctacaa------gtttggaggttttatccaagcaaatgaaggttcataaattgata |
79 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |||||||| |||||||||| ||||||||||||||||| |||||| |
|
|
| T |
36199075 |
tcataatggttgcaagatattgctcacatctacaactacaagtttggagattttatccaaacaaatgaaggttcataacttgata |
36198991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 317
Target Start/End: Complemental strand, 36184376 - 36184340
Alignment:
| Q |
281 |
tatggtaagatttcccttgtttcttgcagtaatttcc |
317 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| |
|
|
| T |
36184376 |
tatggtaagatttcacttgtttcttgcagtaatttcc |
36184340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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