View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19251_low_15 (Length: 318)
Name: NF19251_low_15
Description: NF19251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19251_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 119; Significance: 8e-61; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 180 - 298
Target Start/End: Original strand, 37362184 - 37362302
Alignment:
| Q |
180 |
gagagaggatgataacaattagaatctagataaaacgataaccttgagagaaaattcataaaataaacaaatatgaacaatgatggaatagagaaaaggt |
279 |
Q |
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| T |
37362184 |
gagagaggatgataacaattagaatctagataaaacgataaccttgagagaaaattcataaaataaacaaatatgaacaatgatggaatagagaaaaggt |
37362283 |
T |
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| Q |
280 |
ggaagtgaagttaccttaa |
298 |
Q |
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| T |
37362284 |
ggaagtgaagttaccttaa |
37362302 |
T |
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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 211 - 272
Target Start/End: Complemental strand, 7135603 - 7135542
Alignment:
| Q |
211 |
aaaacgataaccttgagagaaaattcataaaataaacaaatatgaacaatgatggaatagag |
272 |
Q |
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| T |
7135603 |
aaaactattaccttgagagaaaattcacaaaatcaacaaatctgaacaacgatggaatagag |
7135542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 210 - 269
Target Start/End: Complemental strand, 17831549 - 17831490
Alignment:
| Q |
210 |
taaaacgataaccttgagagaaaattcataaaataaacaaatatgaacaatgatggaata |
269 |
Q |
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| T |
17831549 |
taaaactattaccttgagagaaaattcacaaaatcaacaaatctgaacaacgatggaata |
17831490 |
T |
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