View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19251_low_17 (Length: 272)
Name: NF19251_low_17
Description: NF19251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19251_low_17 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 11 - 260
Target Start/End: Original strand, 33504848 - 33505097
Alignment:
| Q |
11 |
cataggataacctactaaatgaaccattattgatctcttcctctatgttacggcacatttgagttagagccttcccactaccaaattcaactaaattttt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33504848 |
cataggataacctactaaatgaaccattattgatctcttcctctatgttacggcacatttgagttagagccttcccactaccaaattcaactaaattttt |
33504947 |
T |
|
| Q |
111 |
gcaatagtttcctgcatctggagtccatccttgttcaaaatcttccaccaatttctctaccgagattttcagtttcctaataatttagtaaccaaaatat |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
33504948 |
gcaatagtttcctgcatctggagtccatccttgttcaaaatcttccaccaatttctctaccgagatttccagtttcctaataatttagtaaccaaaatat |
33505047 |
T |
|
| Q |
211 |
taattaatatttgcatatatagttaacatgcatagtaataagaaaaatat |
260 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33505048 |
taattaatatttgcatatatagttaacatgcatagtaataagaaaaatat |
33505097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University