View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19251_low_23 (Length: 245)
Name: NF19251_low_23
Description: NF19251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19251_low_23 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 8417677 - 8417904
Alignment:
| Q |
1 |
aacaaaggagcagaagataacttcaaagccaaaagtgatgaatcagagcaagtagctgcagcagtagcagcaagaccagacatggttgtagcagtgagaa |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||| |||||||||| | | |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8417677 |
aacaaaagagcagaagataacttcaaagccaaaagtgatgaatctgagcaagtagtgggaacagtagcagcaagaccagacatggttgtagcagtgagag |
8417776 |
T |
|
| Q |
101 |
taatcatgttgatggaattcaagagaagagtgttccaattgttacgttgttcacaaataatgttgtgatgcatttcaattctgtcagaaacaacttccaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8417777 |
taatcatgttgatggaattcaagagaagagtgttccaattgttacgtagttcaca---aatgttgtgatgcatttcaattctgtcagaaacaacttccaa |
8417873 |
T |
|
| Q |
201 |
gactgcatattattcctttctaattgatctt |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
8417874 |
gactgcatattattcctttctaattgatctt |
8417904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 8 - 210
Target Start/End: Complemental strand, 8375537 - 8375338
Alignment:
| Q |
8 |
gagcagaagataacttcaaagccaaaagtgatgaatcagagcaagtagctgcagcagtagcagcaagaccagacatggttgtagcagtgagaataatcat |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||| |
|
|
| T |
8375537 |
gagcagaagataacttcaaagccaaaagtgatgaatcagagcaagtagctgcagcagtagcagcaacaccagacatggttgtagcagtaagagtaatcat |
8375438 |
T |
|
| Q |
108 |
gttgatggaattcaagagaagagtgttccaattgttacgttgttcacaaataatgttgtgatgcatttcaattctgtcagaaacaacttccaagactgca |
207 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| ||||| | |||||| ||||||||||||| ||| |||||||| ||||||||| |||| |
|
|
| T |
8375437 |
gttgatggagttcaagagaagagtgttccaattgttacgctgttcgc---caatgttttgatgcatttcaactctatcagaaactgcttccaagattgca |
8375341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 8 - 210
Target Start/End: Original strand, 8439566 - 8439765
Alignment:
| Q |
8 |
gagcagaagataacttcaaagccaaaagtgatgaatcagagcaagtagctgcagcagtagcagcaagaccagacatggttgtagcagtgagaataatcat |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||| |
|
|
| T |
8439566 |
gagcagaagataacttcaaagccaaaagtgatgaatcagagcaagtagctgcagcagtagcagcaacaccagacatggttgtagcagtaagagtaatcat |
8439665 |
T |
|
| Q |
108 |
gttgatggaattcaagagaagagtgttccaattgttacgttgttcacaaataatgttgtgatgcatttcaattctgtcagaaacaacttccaagactgca |
207 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| |||| ||||| | |||||| ||||||||||||| ||| |||||||| ||||||||| |||| |
|
|
| T |
8439666 |
gttgatggagttcaagagaagagtgttccaattgctacgctgttcgc---caatgttttgatgcatttcaactctatcagaaactgcttccaagattgca |
8439762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 70 - 209
Target Start/End: Complemental strand, 8394924 - 8394788
Alignment:
| Q |
70 |
gcaagaccagacatggttgtagcagtgagaataatcatgttgatggaattcaagagaagagtgttccaattgttacgttgttcacaaataatgttgtgat |
169 |
Q |
| |
|
|||| ||||||||||||||||||||||||| ||||||| || || || || || |||||| | ||||| |||||||||||||| | ||||||||||| |
|
|
| T |
8394924 |
gcaacaccagacatggttgtagcagtgagagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgc---caatgttgtgat |
8394828 |
T |
|
| Q |
170 |
gcatttcaattctgtcagaaacaacttccaagactgcata |
209 |
Q |
| |
|
||||||| |||||||| || ||| |||||||||||||||| |
|
|
| T |
8394827 |
gcatttctattctgtctgatacagcttccaagactgcata |
8394788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 70 - 209
Target Start/End: Original strand, 8406405 - 8406541
Alignment:
| Q |
70 |
gcaagaccagacatggttgtagcagtgagaataatcatgttgatggaattcaagagaagagtgttccaattgttacgttgttcacaaataatgttgtgat |
169 |
Q |
| |
|
|||| ||||||||||||||||||||||||| ||||||| || || || || || |||||| | ||||| |||||||||||||| | ||||||||||| |
|
|
| T |
8406405 |
gcaacaccagacatggttgtagcagtgagagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgc---caatgttgtgat |
8406501 |
T |
|
| Q |
170 |
gcatttcaattctgtcagaaacaacttccaagactgcata |
209 |
Q |
| |
|
||||||| |||||||| || ||| |||||||||||||||| |
|
|
| T |
8406502 |
gcatttctattctgtctgatacagcttccaagactgcata |
8406541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 70 - 209
Target Start/End: Original strand, 8412525 - 8412661
Alignment:
| Q |
70 |
gcaagaccagacatggttgtagcagtgagaataatcatgttgatggaattcaagagaagagtgttccaattgttacgttgttcacaaataatgttgtgat |
169 |
Q |
| |
|
|||| ||||||||||||||||||||||||| ||||||| || || || || || |||||| | ||||| |||||||||||||| | ||||||||||| |
|
|
| T |
8412525 |
gcaacaccagacatggttgtagcagtgagagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgc---caatgttgtgat |
8412621 |
T |
|
| Q |
170 |
gcatttcaattctgtcagaaacaacttccaagactgcata |
209 |
Q |
| |
|
||||||| |||||||| || ||| |||||||||||||||| |
|
|
| T |
8412622 |
gcatttctattctgtctgatacagcttccaagactgcata |
8412661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 70 - 209
Target Start/End: Original strand, 8434623 - 8434759
Alignment:
| Q |
70 |
gcaagaccagacatggttgtagcagtgagaataatcatgttgatggaattcaagagaagagtgttccaattgttacgttgttcacaaataatgttgtgat |
169 |
Q |
| |
|
|||| ||||||||||||||||||||||||| ||||||| || || || || || |||||| | ||||| |||||||||||||| | ||||||||||| |
|
|
| T |
8434623 |
gcaacaccagacatggttgtagcagtgagagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgc---caatgttgtgat |
8434719 |
T |
|
| Q |
170 |
gcatttcaattctgtcagaaacaacttccaagactgcata |
209 |
Q |
| |
|
||||||| |||||||| || ||| |||||||||||||||| |
|
|
| T |
8434720 |
gcatttctattctgtctgatacagcttccaagactgcata |
8434759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 76 - 209
Target Start/End: Complemental strand, 8395161 - 8395031
Alignment:
| Q |
76 |
ccagacatggttgtagcagtgagaataatcatgttgatggaattcaagagaagagtgttccaattgttacgttgttcacaaataatgttgtgatgcattt |
175 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| || || || || || |||||| | ||||| |||||||||||||| | ||||||||||||||||| |
|
|
| T |
8395161 |
ccagacatggttgtagcagtgagagtaatcatttttattgagtttaatagaagattattccagttgttacgttgttcgc---caatgttgtgatgcattt |
8395065 |
T |
|
| Q |
176 |
caattctgtcagaaacaacttccaagactgcata |
209 |
Q |
| |
|
| |||||||| || ||| |||||||||||||||| |
|
|
| T |
8395064 |
ctattctgtctgatacagcttccaagactgcata |
8395031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 148
Target Start/End: Original strand, 8431553 - 8431631
Alignment:
| Q |
70 |
gcaagaccagacatggttgtagcagtgagaataatcatgttgatggaattcaagagaagagtgttccaattgttacgtt |
148 |
Q |
| |
|
|||| ||||||||| || ||||||||||| |||||||||| || || ||||| |||||| | ||||| |||||||||| |
|
|
| T |
8431553 |
gcaacaccagacatagtcttagcagtgagagtaatcatgtttattgagttcaaaagaagattattccagttgttacgtt |
8431631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 41119333 - 41119370
Alignment:
| Q |
8 |
gagcagaagataacttcaaagccaaaagtgatgaatca |
45 |
Q |
| |
|
||||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
41119333 |
gagcataagacaacttcaaagccaaaagtgatgaatca |
41119370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University