View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19251_low_25 (Length: 238)
Name: NF19251_low_25
Description: NF19251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19251_low_25 |
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Alignment Details
Target: chr6 (Bit Score: 220; Significance: 1e-121; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 11196393 - 11196174
Alignment:
| Q |
1 |
ctgctgtccatgcttctatattgagtggtgagtttagtgagaaggttcaagatttactattgtcggaggtcattcctttgtcccttggattggagaaaca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11196393 |
ctgctgtccatgcttctatattgagtggtgagtttagtgagaaggttcaagatttactattgtcggaggtcattcctttgtcccttggattggagaaaca |
11196294 |
T |
|
| Q |
101 |
tggggggattatggaaataataatccctaggaataccaaaattcctgccaaaatggaacatgtattcaccacacatttgcacaaccaaatgaatattcta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11196293 |
tggggggattatggaaataataatccctaggaataccaaaattcctgccaaaatggaacatgtattcaccacacatttgcacaaccaaatgaatattcta |
11196194 |
T |
|
| Q |
201 |
attgatgtttatgaaggtga |
220 |
Q |
| |
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|||||||||||||||||||| |
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| T |
11196193 |
attgatgtttatgaaggtga |
11196174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 11160807 - 11160589
Alignment:
| Q |
1 |
ctgctgtccatgcttctatattgagtggtgagtttagtgagaaggttcaagatttactattgtcggaggtcattcctttgtcccttggattggagaaaca |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
11160807 |
ctgctgtccatgcttctatattgagtggtgagcgtagtgagaaggttcaagatttactattgtcggaggtcattcctttgtcccttggattggagactcg |
11160708 |
T |
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| Q |
101 |
tggggggattatggaaataataatccctaggaataccaaaattcctgccaaaatggaacatgtattcaccacacatttgcacaaccaaatgaatattcta |
200 |
Q |
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| T |
11160707 |
-ggggggattatgaacacaataatccctaggaataccaaaattcctgccaaaatggaacatgtattcaccacacatttgcacaaccaaatgaatattcta |
11160609 |
T |
|
| Q |
201 |
attgatgtttatgaaggtga |
220 |
Q |
| |
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||| |||||||||||||||| |
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| T |
11160608 |
attcatgtttatgaaggtga |
11160589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 11155940 - 11155727
Alignment:
| Q |
1 |
ctgctgtccatgcttctatattgagtggtgagtttagtgagaaggttcaagatttactattgtcggaggtcattcctttgtcccttggattggagaaaca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| || |
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| T |
11155940 |
ctgctgtccatgcttctatattgagtggtgagtgtagtgagaa------agatttacaattgtcggaggtcattcctttgtcccttggattggagactca |
11155847 |
T |
|
| Q |
101 |
tggggggattatggaaataataatccctaggaataccaaaattcctgccaaaatggaacatgtattcaccacacatttgcacaaccaaatgaatattcta |
200 |
Q |
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||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11155846 |
tggggggattatgaacacaataatccctaggaataccaaaattcctgccaaaatggaacatgtattcaccacacatttgcacaaccaaatgaatattcta |
11155747 |
T |
|
| Q |
201 |
attgatgtttatgaaggtga |
220 |
Q |
| |
|
||| |||||||||||||||| |
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| T |
11155746 |
attcatgtttatgaaggtga |
11155727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 11199383 - 11199170
Alignment:
| Q |
1 |
ctgctgtccatgcttctatattgagtggtgagtttagtgagaaggttcaagatttactattgtcggaggtcattcctttgtcccttggattggagaaaca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| || |
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| T |
11199383 |
ctgctgtccatgcttctatattgagtggtgagtgtagtgagaa------agatttacaattgtcggaggtcattcctttgtcccttggattggagactca |
11199290 |
T |
|
| Q |
101 |
tggggggattatggaaataataatccctaggaataccaaaattcctgccaaaatggaacatgtattcaccacacatttgcacaaccaaatgaatattcta |
200 |
Q |
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|
||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
11199289 |
tggggggattatgaacacaataatccctaggaataccaaaattcctgccaaaatggaacatgtattcaccacacatttgcacaaccacatgaatattcta |
11199190 |
T |
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| Q |
201 |
attgatgtttatgaaggtga |
220 |
Q |
| |
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||| |||||||||||||||| |
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| T |
11199189 |
attcatgtttatgaaggtga |
11199170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 5 - 96
Target Start/End: Original strand, 11241925 - 11242016
Alignment:
| Q |
5 |
tgtccatgcttctatattgagtggtgagtttagtgagaaggttcaagatttactattgtcggaggtcattcctttgtcccttggattggaga |
96 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
11241925 |
tgtccatgcttctatattgagtggtgagtttagtgagaaggttcaagatttactattgtcggaggtcatttctttgtcccttggattggaga |
11242016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 11132664 - 11132445
Alignment:
| Q |
1 |
ctgctgtccatgcttctatattgagtggtgagtttagtgagaaggttcaagatttactattgtcggaggtcattcctttgtcccttggattggagaaaca |
100 |
Q |
| |
|
||||||||||||| || ||||||| |||||| |||||||| |||||| | ||| | || | ||||||||||||||| |||||||||||||||||||| |
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| T |
11132664 |
ctgctgtccatgcatcaatattgaatggtgattttagtgaaaaggttagcgttttgcgatcgagggaggtcattcctttatcccttggattggagaaaca |
11132565 |
T |
|
| Q |
101 |
tggggggattatggaaataataatccctaggaataccaaaattcctgccaaaatggaacatgtattcaccacacatttgcacaaccaaatgaatattcta |
200 |
Q |
| |
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|||||| || ||| || ||| || |||||||||||| ||||||| ||| |||||||| |||||||| |||||| | || ||||||| |||||| | |
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| T |
11132564 |
tgggggaatcatgtcaacaatgattcctaggaataccttaattcctaccagcatggaacaagtattcacaacacatcttcataaccaaaccaatattttg |
11132465 |
T |
|
| Q |
201 |
attgatgtttatgaaggtga |
220 |
Q |
| |
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||| ||||||| || ||||| |
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| T |
11132464 |
attcatgtttacgagggtga |
11132445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 55
Target Start/End: Original strand, 11319803 - 11319849
Alignment:
| Q |
9 |
catgcttctatattgagtggtgagtttagtgagaaggttcaagattt |
55 |
Q |
| |
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||||||||||||||||||||||||||| |||| ||| |||||||||| |
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| T |
11319803 |
catgcttctatattgagtggtgagttttgtgaaaagtttcaagattt |
11319849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 11275609 - 11275555
Alignment:
| Q |
1 |
ctgctgtccatgcttctatattgagtggtgagtttagtgagaaggttcaagattt |
55 |
Q |
| |
|
||||| ||||||||| |||||||||||||||| || |||| ||| |||||||||| |
|
|
| T |
11275609 |
ctgctatccatgcttttatattgagtggtgagctttgtgaaaagtttcaagattt |
11275555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 11209047 - 11208959
Alignment:
| Q |
1 |
ctgctgtccatgcttctatattgagtggtgagtttagtgagaaggttcaagatttactattgtcggaggtcattcctttgtcccttgga |
89 |
Q |
| |
|
||||||||||||||| |||| ||||||||| || |||| ||| |||||||||| |||| ||| |||| |||||||||||||||| |
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| T |
11209047 |
ctgctgtccatgcttttatagcaagtggtgagatttgtgaaaagtttcaagatttgacattgagggaagtcaatcctttgtcccttgga |
11208959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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