View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19251_low_3 (Length: 541)
Name: NF19251_low_3
Description: NF19251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19251_low_3 |
 | |
|
| [»] scaffold0428 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 494; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 18 - 531
Target Start/End: Original strand, 8294783 - 8295296
Alignment:
| Q |
18 |
attgacatgcttgcttcattatttgactcattcctaatcataggtccaaccggataaacactaggtttctctctatcttgaagaacccttatgacttccg |
117 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8294783 |
attgacatgtttgcttcattatttgactcattcctaatcataggtccaaccggataaacactaggtttctctctatcttgaagaacccttatgacttccg |
8294882 |
T |
|
| Q |
118 |
gttccaaatcagtgaaagtattcataataacaccatcaaacaatgataatttttgacacacatcaagaattgatttgtaggcatcacttgatctttcaca |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8294883 |
gttccaaatcagtgaaagtattcataataacaccatcaaacaatgataatttttgacacacatcaagaattgatttgtaggcatcacttgatctttcaca |
8294982 |
T |
|
| Q |
218 |
gataaacgggtcgggaagctctttgatatggagaggaatagaaaaaccaggaatatttactgtttcataacttgattctaagaactgagttgatgcagct |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
8294983 |
gataaacgggtcgggaagctctttgatatggagaggaatagaaaaaccaggaatatttactgtttcataacttgatcctaagaactgagttgatgcagct |
8295082 |
T |
|
| Q |
318 |
tcatcaaggtttggaatagtgagaaataaagagaataaaacagctccagaggaaaagaaaaggtatgataaaaggttgaaatgtttagcaacatcatgtg |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
8295083 |
tcatcaaggtttggaatagtgagaaataaagagaataaaacagctcctgaggaaaagaaaaggtatgataaaaggttgaaatgtttcgcaacatcatgtg |
8295182 |
T |
|
| Q |
418 |
catcggttgaaaacatgctgaaaactaaagcaactaggcgagtttttgaaaggagtgattttacttcttcatgaagaaatggaatagagtgtttcactat |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
8295183 |
catcggttgaaaacatgctgaaaactaaagcaactaggcgagtttttgaaaggagtgattttacttcttcataaagaaatggaatagagtgtttcactat |
8295282 |
T |
|
| Q |
518 |
gagtttcatctgtg |
531 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
8295283 |
gagtttcatctgtg |
8295296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 20 - 531
Target Start/End: Complemental strand, 33256970 - 33256459
Alignment:
| Q |
20 |
tgacatgcttgcttcattatttgactcattcctaatcataggtccaaccggataaacactaggtttctctctatcttgaagaacccttatgacttccggt |
119 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||| |||||||| ||||||| | ||||| || |
|
|
| T |
33256970 |
tgacatgtttgcttcattatttgactcatttctaatgataggtccaaccggaaaaacactaggtttctctctgtcttgaagtacccttacggcttccagt |
33256871 |
T |
|
| Q |
120 |
tccaaatcagtgaaagtattcataataacaccatcaaacaatgataatttttgacacacatcaagaattgatttgtaggcatcacttgatctttcacaga |
219 |
Q |
| |
|
||||||| | |||||||||| || |||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |
|
|
| T |
33256870 |
tccaaattactgaaagtattgattataacaccatcaaacaatgacgatttttgacacacatcaaggattgatttgtaggtatcacttgatctttcacagt |
33256771 |
T |
|
| Q |
220 |
taaacgggtcgggaagctctttgatatggagaggaatagaaaaaccaggaatatttactgtttcataacttgattctaagaactgagttgatgcagcttc |
319 |
Q |
| |
|
|||||||||| ||||||||||||| ||||| |||||||||||||||||||| |||||| |||||||||||||| ||||||||||||| |||||||| || |
|
|
| T |
33256770 |
taaacgggtctggaagctctttgacatggaaaggaatagaaaaaccaggaacatttaccatttcataacttgatcctaagaactgagtagatgcagcatc |
33256671 |
T |
|
| Q |
320 |
atcaaggtttggaatagtgagaaataaagagaataaaacagctccagaggaaaagaaaaggtatgataaaaggttgaaatgtttagcaacatcatgtgca |
419 |
Q |
| |
|
||| |||||||||| ||||||||| |||||||||||||||||||| || |||||||||||||| || |||||||||||||||||||| ||||| |||||| |
|
|
| T |
33256670 |
atcgaggtttggaagagtgagaaagaaagagaataaaacagctcctgaagaaaagaaaaggtaagacaaaaggttgaaatgtttagctacatcgtgtgca |
33256571 |
T |
|
| Q |
420 |
tcggttgaaaacatgctgaaaactaaagcaactaggcgagtttttgaaaggagtgattttacttcttcatgaagaaatggaatagagtgtttcactatga |
519 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33256570 |
tcggttgaaaacatgctgcaaactaaagcaacaaggttagtttttgaaagaagtgattttacttcttcatgaagaaatggaatagagtgtttcactatga |
33256471 |
T |
|
| Q |
520 |
gtttcatctgtg |
531 |
Q |
| |
|
||||||| |||| |
|
|
| T |
33256470 |
gtttcatttgtg |
33256459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 20 - 531
Target Start/End: Complemental strand, 1088 - 577
Alignment:
| Q |
20 |
tgacatgcttgcttcattatttgactcattcctaatcataggtccaaccggataaacactaggtttctctctatcttgaagaacccttatgacttccggt |
119 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||| |||||||| ||||||| | ||||| || |
|
|
| T |
1088 |
tgacatgtttgcttcattatttgactcatttctaatgataggtccaaccggaaaaacactaggtttctctctgtcttgaagtacccttacggcttccagt |
989 |
T |
|
| Q |
120 |
tccaaatcagtgaaagtattcataataacaccatcaaacaatgataatttttgacacacatcaagaattgatttgtaggcatcacttgatctttcacaga |
219 |
Q |
| |
|
||||||| | |||||||||| || |||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |
|
|
| T |
988 |
tccaaattactgaaagtattgattataacaccatcaaacaatgacgatttttgacacacatcaaggattgatttgtaggtatcacttgatctttcacagt |
889 |
T |
|
| Q |
220 |
taaacgggtcgggaagctctttgatatggagaggaatagaaaaaccaggaatatttactgtttcataacttgattctaagaactgagttgatgcagcttc |
319 |
Q |
| |
|
|||||||||| ||||||||||||| ||||| |||||||||||||||||||| |||||| |||||||||||||| ||||||||||||| |||||||| || |
|
|
| T |
888 |
taaacgggtctggaagctctttgacatggaaaggaatagaaaaaccaggaacatttaccatttcataacttgatcctaagaactgagtagatgcagcatc |
789 |
T |
|
| Q |
320 |
atcaaggtttggaatagtgagaaataaagagaataaaacagctccagaggaaaagaaaaggtatgataaaaggttgaaatgtttagcaacatcatgtgca |
419 |
Q |
| |
|
||| |||||||||| ||||||||| |||||||||||||||||||| || |||||||||||||| || |||||||||||||||||||| ||||| |||||| |
|
|
| T |
788 |
atcgaggtttggaagagtgagaaagaaagagaataaaacagctcctgaagaaaagaaaaggtaagacaaaaggttgaaatgtttagctacatcgtgtgca |
689 |
T |
|
| Q |
420 |
tcggttgaaaacatgctgaaaactaaagcaactaggcgagtttttgaaaggagtgattttacttcttcatgaagaaatggaatagagtgtttcactatga |
519 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
688 |
tcggttgaaaacatgctgcaaactaaagcaacaaggttagtttttgaaagaagtgattttacttcttcatgaagaaatggaatagagtgtttcactatga |
589 |
T |
|
| Q |
520 |
gtttcatctgtg |
531 |
Q |
| |
|
||||||| |||| |
|
|
| T |
588 |
gtttcatttgtg |
577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 96; Significance: 8e-47; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 223 - 382
Target Start/End: Original strand, 46720649 - 46720808
Alignment:
| Q |
223 |
acgggtcgggaagctctttgatatggagaggaatagaaaaaccaggaatatttactgtttcataacttgattctaagaactgagttgatgcagcttcatc |
322 |
Q |
| |
|
||||||| | ||| ||||||| ||||| ||||||||||||| ||||| |||||||||||||||| ||||||| |||||||||||||| ||| ||||||| |
|
|
| T |
46720649 |
acgggtctgaaagatctttgacatggaatggaatagaaaaactaggaacatttactgtttcataatttgattcgaagaactgagttgaagcaacttcatc |
46720748 |
T |
|
| Q |
323 |
aaggtttggaatagtgagaaataaagagaataaaacagctccagaggaaaagaaaaggta |
382 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||| | ||||| ||||||||||| |
|
|
| T |
46720749 |
aaggtttggaatagtgagaaacaaagagaataaaacagctactgaggacaagaaaaggta |
46720808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 85 - 179
Target Start/End: Original strand, 46720520 - 46720614
Alignment:
| Q |
85 |
tctctctatcttgaagaacccttatgacttccggttccaaatcagtgaaagtattcataataacaccatcaaacaatgataatttttgacacaca |
179 |
Q |
| |
|
||||||| ||| ||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
46720520 |
tctctctctctctaagtacccttatggcttccagttccaaatcagtgaaagtattcataataacaccatcaaacaatgataattttggacacaca |
46720614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 20 - 91
Target Start/End: Original strand, 46720428 - 46720498
Alignment:
| Q |
20 |
tgacatgcttgcttcattatttgactcattcctaatcataggtccaaccggataaacactaggtttctctct |
91 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||| |
|
|
| T |
46720428 |
tgacatgcttgcttcattatttgactcattcctaatggcaggtccaa-cggataaacactagggttctctct |
46720498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 3e-31; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 60 - 217
Target Start/End: Original strand, 894876 - 895033
Alignment:
| Q |
60 |
ggtccaaccggataaacactaggtttctctctatcttgaagaacccttatgacttccggttccaaatcagtgaaagtattcataataacaccatcaaaca |
159 |
Q |
| |
|
||||| || ||||||| || |||||||||| | |||||||||| ||||||||| || |||||||||||| ||||||| || || ||||||||||||| | |
|
|
| T |
894876 |
ggtcccactggataaaaacaaggtttctctttttcttgaagaagccttatgacctcaggttccaaatcattgaaagtgtttatgataacaccatcaacta |
894975 |
T |
|
| Q |
160 |
atgataatttttgacacacatcaagaattgatttgtaggcatcacttgatctttcaca |
217 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||||||| | ||||||||||||||| |
|
|
| T |
894976 |
atgagaatttttgacacacatcaagaaatgatttgtactctaaacttgatctttcaca |
895033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 356 - 535
Target Start/End: Original strand, 895178 - 895357
Alignment:
| Q |
356 |
aacagctccagaggaaaagaaaaggtatgataaaaggttgaaatgtttagcaacatcatgtgcatcggttgaaaacatgctgaaaactaaagcaactagg |
455 |
Q |
| |
|
||||||||| |||| | |||||||||| || | | ||| || ||||| ||||| |||| |||||| |||||||| || ||||| | ||||| ||| ||| |
|
|
| T |
895178 |
aacagctcctgaggcatagaaaaggtaagaagacaagttaaattgtttggcaacttcatatgcatctgttgaaaatatactgaagattaaagaaacaagg |
895277 |
T |
|
| Q |
456 |
cgagtttttgaaaggagtgattttacttcttcatgaagaaatggaatagagtgtttcactatgagtttcatctgtgctgc |
535 |
Q |
| |
|
|||||| |||| ||||||||| ||||||| ||||||||||||||||| |||||||| ||||||||||| |||||||| |
|
|
| T |
895278 |
ttagttttggaaatgagtgatttaacttcttgttgaagaaatggaatagaatgtttcacaatgagtttcatttgtgctgc |
895357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 42 - 531
Target Start/End: Complemental strand, 905785 - 905290
Alignment:
| Q |
42 |
gactcattcctaatcataggtccaaccggataaacactaggtttctctctatcttgaagaacccttatgacttccggttccaaatcagtgaaagtattca |
141 |
Q |
| |
|
|||||||| ||||| || ||||| || |||||||||| |||||||||| | ||||||||||||||||| || || || ||||||||||||||||| | | |
|
|
| T |
905785 |
gactcatttctaataatgggtcccactggataaacacaaggtttctctttttcttgaagaacccttataacatctggctccaaatcagtgaaagtgctga |
905686 |
T |
|
| Q |
142 |
taataacaccatcaaacaatgataatttttgacacacatcaagaattgatttgtaggcatcacttgatctttcacagataaacgggtcgggaagctcttt |
241 |
Q |
| |
|
| |||| |||||||| |||| | ||||||||| || ||||||| | |||||| || ||||||||||||| | || || |||| ||||| |
|
|
| T |
905685 |
ttataaaaccatcaactaatgtgagtttttgacaaacttcaagaaatattttgtaatttacatttgatctttcacatagaattatttctggaatatcttt |
905586 |
T |
|
| Q |
242 |
gatatggagaggaatagaaaaaccaggaatatttactgtttcataacttgattctaagaa--ctg----agttgatgcagcttcatcaaggtttggaata |
335 |
Q |
| |
|
|||||| | || || | |||| |||||||| || ||||||||| |||||||||||| ||| || || ||| || || || || |||| | |
|
|
| T |
905585 |
gatatgaaatgggatgacacaacctggaatattcacagtttcataagctgattctaagaattctgcttcagaggaaacagagtcgtcgagattcggaaga |
905486 |
T |
|
| Q |
336 |
gtgagaaataaagagaataaaacagctccagaggaaaagaaaaggtatgataaaaggttgaaatgtttagcaacatcatgtgcatcggttgaaaacatgc |
435 |
Q |
| |
|
|||||||| || || ||| ||| ||| || |||| | |||||||||| || | | ||||| ||||||||||| ||||||||||||||||| || | | |
|
|
| T |
905485 |
gtgagaaagaatgacaatgaaagagcacccgaggcatagaaaaggtaagaagataaattgaattgtttagcaacttcatgtgcatcggttgagaatagac |
905386 |
T |
|
| Q |
436 |
tgaaaactaaagcaactaggcgagtttttgaaaggagtgattttacttcttcatgaagaaatggaatagagtgtttcactatgagtttcatctgtg |
531 |
Q |
| |
|
|| | ||||| ||| ||| |||||| |||| |||||||||||||||||| || |||||||||||||| |||||||| ||||||||||| |||| |
|
|
| T |
905385 |
caaagattaaagaaacaaggttagttttggaaatgagtgattttacttcttcttgtagaaatggaatagaatgtttcacaatgagtttcatttgtg |
905290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University