View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19251_low_6 (Length: 400)
Name: NF19251_low_6
Description: NF19251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19251_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 379
Target Start/End: Original strand, 41866502 - 41866880
Alignment:
| Q |
1 |
caacagcgagttatcaccacgagaacaagaccgatttttaccaatagcaaacgtgagcagaataatgaagaaggcgttaccagcaaacgcgaagatctcg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41866502 |
caacagcgagttatcaccacgagaacaagaccgatttttaccaatagcaaacgtgagcagaataatgaagaaggcgttaccagcaaacgcgaagatctcg |
41866601 |
T |
|
| Q |
101 |
aaagatgctaaggaaacggtgcaggaatgtgtatcggagttcatcagcttcatcaccggtgaagcttccgataagtgtcagagagagaaacgaaagacga |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41866602 |
aaagatgctaaggaaacggtgcaggaatgtgtatcggagttcatcagcttcatcaccggtgaagcttccgataagtgtcagagagagaaacgaaagacga |
41866701 |
T |
|
| Q |
201 |
tcaacggcgacgatctactttgggcgatgactacgttaggatttgaagagtacgttgaaccgttgaagatttatcttcaacgattcagagagatcgaagg |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41866702 |
tcaacggcgacgatctactttgggcgatgactacgttaggatttgaagagtacgttgaaccgttgaagatttatcttcaacgattcagagagatcgaagg |
41866801 |
T |
|
| Q |
301 |
tgagaaaaccgttgctgcacgtgataaagatggtgttgctccatcttcttcttcgtcttcagtttttgattatggtgct |
379 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41866802 |
tgagaaaaccgttgctgcacgtgataaagatggtgttgctccatcttcttcttcgtcttcagtttttgattatggtgct |
41866880 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 130; Significance: 3e-67; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 5 - 330
Target Start/End: Original strand, 23569664 - 23569989
Alignment:
| Q |
5 |
agcgagttatcaccacgagaacaagaccgatttttaccaatagcaaacgtgagcagaataatgaagaaggcgttaccagcaaacgcgaagatctcgaaag |
104 |
Q |
| |
|
|||||| | |||||||||||||||||||||||| | |||||||||||||| ||||| || ||||| || || ||||||| |||||||||||||| |||| |
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| T |
23569664 |
agcgagatgtcaccacgagaacaagaccgatttcttccaatagcaaacgtaagcaggatcatgaaaaaagcactaccagcgaacgcgaagatctcaaaag |
23569763 |
T |
|
| Q |
105 |
atgctaaggaaacggtgcaggaatgtgtatcggagttcatcagcttcatcaccggtgaagcttccgataagtgtcagagagagaaacgaaagacgatcaa |
204 |
Q |
| |
|
| || |||||||| || || || ||||| || ||||||||||||||||||||||| ||||| |||||||||||||| | ||||| || ||||||||||| |
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| T |
23569764 |
acgcaaaggaaacagttcaagagtgtgtttcagagttcatcagcttcatcaccggcgaagcctccgataagtgtcaacgtgagaagcggaagacgatcaa |
23569863 |
T |
|
| Q |
205 |
cggcgacgatctactttgggcgatgactacgttaggatttgaagagtacgttgaaccgttgaagatttatcttcaacgattcagagagatcgaaggtgag |
304 |
Q |
| |
|
|||||| ||| | |||||||||||||| ||||| ||||| || ||||| ||||| |||||||| |||||||||||| || || ||||| ||||||||| |
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|
| T |
23569864 |
cggcgatgatttgctttgggcgatgacgacgttgggattcgaggagtatgttgagccgttgaaaggttatcttcaacggtttagggagatggaaggtgag |
23569963 |
T |
|
| Q |
305 |
aaaaccgttgctgcacgtgataaaga |
330 |
Q |
| |
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|| ||||| | || ||||||||||| |
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|
| T |
23569964 |
aagaccgtgggggcgcgtgataaaga |
23569989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 41 - 258
Target Start/End: Original strand, 9722639 - 9722856
Alignment:
| Q |
41 |
ccaatagcaaacgtgagcagaataatgaagaaggcgttaccagcaaacgcgaagatctcgaaagatgctaaggaaacggtgcaggaatgtgtatcggagt |
140 |
Q |
| |
|
||||||||||||||||| || || ||||| ||||| |||||||||||||| |||||||| ||||| || || ||||| || || || |||||||| |||| |
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| T |
9722639 |
ccaatagcaaacgtgagtaggatcatgaaaaaggctttaccagcaaacgcaaagatctcaaaagaagcaaaagaaacagtacaagagtgtgtatcagagt |
9722738 |
T |
|
| Q |
141 |
tcatcagcttcatcaccggtgaagcttccgataagtgtcagagagagaaacgaaagacgatcaacggcgacgatctactttgggcgatgactacgttagg |
240 |
Q |
| |
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| ||||| ||||| || || |||||||| ||||||||||||| |||||| | || || |||||||| || ||||| |||||||| ||||| || | || |
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|
| T |
9722739 |
ttatcagtttcataactggagaagcttctgataagtgtcagaaagagaagaggaaaacaatcaacggtgatgatcttctttgggctatgacaactcttgg |
9722838 |
T |
|
| Q |
241 |
atttgaagagtacgttga |
258 |
Q |
| |
|
||||||||| || ||||| |
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|
| T |
9722839 |
atttgaagattatgttga |
9722856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 44 - 234
Target Start/End: Original strand, 56067904 - 56068094
Alignment:
| Q |
44 |
atagcaaacgtgagcagaataatgaagaaggcgttaccagcaaacgcgaagatctcgaaagatgctaaggaaacggtgcaggaatgtgtatcggagttca |
143 |
Q |
| |
|
|||||||||||| | || || |||||||| |||||||| | | || ||||| |||||||| ||||| |||||| |||| || |||||||| ||||||| |
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| T |
56067904 |
atagcaaacgtgggtaggatcatgaagaaagcgttaccgacgagagcaaagatatcgaaagaagctaaagaaacgatgcaagagtgtgtatcagagttca |
56068003 |
T |
|
| Q |
144 |
tcagcttcatcaccggtgaagcttccgataagtgtcagagagagaaacgaaagacgatcaacggcgacgatctactttgggcgatgactac |
234 |
Q |
| |
|
| |||||||| || |||||||| || || |||||||||| |||||| | ||||| || ||||| || ||||| | ||||| |||||||| |
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|
| T |
56068004 |
taagcttcataacaggtgaagcatctgaaaagtgtcagaaagagaagaggaagacaataaacggtgatgatcttgtgtgggccatgactac |
56068094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 22 - 231
Target Start/End: Original strand, 38281562 - 38281771
Alignment:
| Q |
22 |
agaacaagaccgatttttaccaatagcaaacgtgagcagaataatgaagaaggcgttaccagcaaacgcgaagatctcgaaagatgctaaggaaacggtg |
121 |
Q |
| |
|
|||||||||| | || ||||||| || ||||||||| | |||||||| | || | |||||||| || || ||||| ||||| || || |||||||| |
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| T |
38281562 |
agaacaagacaggttcctaccaattgctaacgtgagccgtataatgaaaagagcacttccagcaaatgctaaaatctcaaaagaagcaaaagaaacggtt |
38281661 |
T |
|
| Q |
122 |
caggaatgtgtatcggagttcatcagcttcatcaccggtgaagcttccgataagtgtcagagagagaaacgaaagacgatcaacggcgacgatctacttt |
221 |
Q |
| |
|
|| |||||||| || |||||||| || ||||| || ||||||||||| ||||||||||||||||| ||| | || || || || || || ||||| |||| |
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|
| T |
38281662 |
caagaatgtgtctctgagttcattagtttcattactggtgaagcttctgataagtgtcagagagaaaaaaggaaaacaattaatggtgatgatcttcttt |
38281761 |
T |
|
| Q |
222 |
gggcgatgac |
231 |
Q |
| |
|
|||| ||||| |
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|
| T |
38281762 |
gggctatgac |
38281771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 125 - 249
Target Start/End: Original strand, 39304579 - 39304703
Alignment:
| Q |
125 |
gaatgtgtatcggagttcatcagcttcatcaccggtgaagcttccgataagtgtcagagagagaaacgaaagacgatcaacggcgacgatctactttggg |
224 |
Q |
| |
|
|||||||| ||||||||||| || || ||||||| ||||| || ||||| ||||| ||||| ||| ||||||| |||||||| || ||| | |||||| |
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|
| T |
39304579 |
gaatgtgtgtcggagttcataagttttgtcaccggggaagcatcggataaatgtcaaagagaaaaaagaaagacaatcaacggtgatgatattatttggg |
39304678 |
T |
|
| Q |
225 |
cgatgactacgttaggatttgaaga |
249 |
Q |
| |
|
| || || |||||||| |||||||| |
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|
| T |
39304679 |
ctattacaacgttaggctttgaaga |
39304703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 101 - 157
Target Start/End: Original strand, 22139811 - 22139867
Alignment:
| Q |
101 |
aaagatgctaaggaaacggtgcaggaatgtgtatcggagttcatcagcttcatcacc |
157 |
Q |
| |
|
||||||||||||||||| || |||||||| || || ||||||||||||||||||||| |
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|
| T |
22139811 |
aaagatgctaaggaaaccgttcaggaatgcgtctccgagttcatcagcttcatcacc |
22139867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 101 - 157
Target Start/End: Original strand, 40539201 - 40539257
Alignment:
| Q |
101 |
aaagatgctaaggaaacggtgcaggaatgtgtatcggagttcatcagcttcatcacc |
157 |
Q |
| |
|
||||||||||||||||| || |||||||| || || ||||||||||||||||||||| |
|
|
| T |
40539201 |
aaagatgctaaggaaaccgttcaggaatgcgtctccgagttcatcagcttcatcacc |
40539257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 246
Target Start/End: Original strand, 22139960 - 22140036
Alignment:
| Q |
170 |
gataagtgtcagagagagaaacgaaagacgatcaacggcgacgatctactttgggcgatgactacgttaggatttga |
246 |
Q |
| |
|
|||||||||||||||||||| | |||||||| ||||| || ||| | |||||||||||| |||| ||||| ||||| |
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|
| T |
22139960 |
gataagtgtcagagagagaagaggaagacgattaacggtgatgatttgctttgggcgatggctactttagggtttga |
22140036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 246
Target Start/End: Original strand, 40539350 - 40539426
Alignment:
| Q |
170 |
gataagtgtcagagagagaaacgaaagacgatcaacggcgacgatctactttgggcgatgactacgttaggatttga |
246 |
Q |
| |
|
|||||||||||||||||||| | |||||||| ||||| || ||| | |||||||||||| |||| ||||| ||||| |
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| T |
40539350 |
gataagtgtcagagagagaagaggaagacgattaacggtgatgatttgctttgggcgatggctactttagggtttga |
40539426 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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