View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19251_low_7 (Length: 371)
Name: NF19251_low_7
Description: NF19251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19251_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 103 - 352
Target Start/End: Complemental strand, 16079518 - 16079269
Alignment:
| Q |
103 |
cacaaagcttgatccttttgtaacaacctccacctccacttcgccaaaagactcaaattcactaccctcatatctccaactccgaaccctcatttggcac |
202 |
Q |
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| T |
16079518 |
cacaaagcttgatccttttgtaacaacctccacctccacttcgccaaaagactcaaattcactaccctcatatctccaactcccaaccctcctttggcac |
16079419 |
T |
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| Q |
203 |
gaggttggcaaaccatcgaccactttacccaacacaccttctttccccatcactccaccccatagaaattctctttgaattttcaccactctcttccaca |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16079418 |
gaggttggcaaaccatcgaccactttacccaacacaccttctttccccatcactccaccccatagaaattctctttgaattttcaccactctcttccaca |
16079319 |
T |
|
| Q |
303 |
ccttcaccagcaacttcaaaaaagaaagatggaaaataggaatagcattc |
352 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16079318 |
ccttcaccagcaacttcaaaaaagaaagatggaaaataggaatagcattc |
16079269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 8 - 108
Target Start/End: Complemental strand, 16080710 - 16080606
Alignment:
| Q |
8 |
cagcacagaacagatacaaagggcccataaaacgtttatccacgtacata----acagcaccaaaaagacagacacagcagaaactaaaaaccagaaaac |
103 |
Q |
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||||||| |||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16080710 |
cagcacaaaacagatacaaagggcccataaaacggttacccacgtacatatataacagcaccaaaaagacagacacagcagaaactaaaaaccagaaaac |
16080611 |
T |
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| Q |
104 |
acaaa |
108 |
Q |
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||||| |
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| T |
16080610 |
acaaa |
16080606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 166 - 327
Target Start/End: Original strand, 21943610 - 21943764
Alignment:
| Q |
166 |
accctcatatctccaactccgaaccctcatttggcacgaggttggcaaaccatcgaccactttacccaacacaccttctttccccatcactccaccccat |
265 |
Q |
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| T |
21943610 |
accctcatatctctaacccccaatccccctttggctcgaggttggcaaaccgtcgaccacttaacccaattcaccttcttccccc-------ccccccaa |
21943702 |
T |
|
| Q |
266 |
agaaattctctttgaattttcaccactctcttccacaccttcaccagcaacttcaaaaaaga |
327 |
Q |
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|||||||||||||||||| |||||||| ||||||||||| ||||| ||||||| |||||||| |
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| T |
21943703 |
agaaattctctttgaattctcaccactttcttccacaccctcaccggcaacttgaaaaaaga |
21943764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 352
Target Start/End: Complemental strand, 38969944 - 38969844
Alignment:
| Q |
252 |
tcactccaccccatagaaattctctttgaattttcaccactctcttccacaccttcaccagcaacttcaaaaaagaaagatggaaaataggaatagcatt |
351 |
Q |
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| T |
38969944 |
tcactccaccccaacgacattgacgttgaattctcactactttcttcaacaccttcaccggtgacttgaaaaaggaaagataaaaaataggaatagcatt |
38969845 |
T |
|
| Q |
352 |
c |
352 |
Q |
| |
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| |
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| T |
38969844 |
c |
38969844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 103 - 330
Target Start/End: Original strand, 3762067 - 3762296
Alignment:
| Q |
103 |
cacaaagcttgatccttttgtaacaacctccacctccacttcgccaaaagactcaaattcactaccctcatatctccaactccgaaccctcatttggcac |
202 |
Q |
| |
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||||||||||||||| ||| | ||||||||||||||| || | |||||||| |||||||| | ||| || |||| |||||| || || | | | | |
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| T |
3762067 |
cacaaagcttgatccggttgaatcaacctccacctccatttatctaaaagactaaaattcaccatccttatgtctctaactcccaaacccccctaagatc |
3762166 |
T |
|
| Q |
203 |
gaggttggcaaaccatcgaccactttacccaacacaccttctttcccc--atcactccaccccatagaaattctctttgaattttcaccactctcttcca |
300 |
Q |
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||||| |||| ||| ||||||||||||||||||| |||||||| |||| ||||| || ||||| ||||||||||||| |||| ||||||| ||||||| |
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| T |
3762167 |
gaggtaggcataccgtcgaccactttacccaacaaaccttcttaccccccatcacacctccccaaagaaattctctttcaattctcaccaccgtcttcca |
3762266 |
T |
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| Q |
301 |
caccttcaccagcaacttcaaaaaagaaag |
330 |
Q |
| |
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|||||| ||| | ||||| ||||||||||| |
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| T |
3762267 |
cacctttaccggtaacttgaaaaaagaaag |
3762296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 129 - 164
Target Start/End: Original strand, 12279471 - 12279506
Alignment:
| Q |
129 |
cctccacctccacttcgccaaaagactcaaattcac |
164 |
Q |
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||||||||||||||||||||||||||| |||||||| |
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| T |
12279471 |
cctccacctccacttcgccaaaagacttaaattcac |
12279506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 229 - 352
Target Start/End: Complemental strand, 44683398 - 44683273
Alignment:
| Q |
229 |
acccaacacaccttctttcc-ccatc-actccaccccatagaaattctctttgaattttcaccactctcttccacaccttcaccagcaacttcaaaaaag |
326 |
Q |
| |
|
||||||||||| |||||||| |||| || || |||||||| ||||||||||||||| ||||||| |||||||||||||| ||| ||||||| ||||||| |
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| T |
44683398 |
acccaacacactttctttccaccattgacacctccccataggaattctctttgaattctcaccaccctcttccacacctttaccggcaacttaaaaaaag |
44683299 |
T |
|
| Q |
327 |
aaagatggaaaataggaatagcattc |
352 |
Q |
| |
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||||| |||||||||||||||||| |
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| T |
44683298 |
caagataaaaaataggaatagcattc |
44683273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 260 - 352
Target Start/End: Original strand, 42112228 - 42112320
Alignment:
| Q |
260 |
ccccatagaaattctctttgaattttcaccactctcttccacaccttcaccagcaacttcaaaaaagaaagatggaaaataggaatagcattc |
352 |
Q |
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|
|||||||| ||||||||||||||| ||||||| |||||||||||||| ||| ||||||| ||||||| ||||| ||| |||||||||||||| |
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| T |
42112228 |
ccccataggaattctctttgaattctcaccaccctcttccacacctttaccggcaacttaaaaaaagcaagataaaaattaggaatagcattc |
42112320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 220 - 332
Target Start/End: Complemental strand, 55328065 - 55327951
Alignment:
| Q |
220 |
gaccactttacccaacacaccttctttcccca--tcactccaccccatagaaattctctttgaattttcaccactctcttccacaccttcaccagcaact |
317 |
Q |
| |
|
|||||||| |||||||||||||| ||||||| ||||||||||||| || |||| | ||||||| |||||||| ||||||||||||||||| | | || |
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| T |
55328065 |
gaccacttaacccaacacaccttatttccccccttcactccaccccaaaggaattgacgttgaattctcaccactttcttccacaccttcaccggtagct |
55327966 |
T |
|
| Q |
318 |
tcaaaaaagaaagat |
332 |
Q |
| |
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| ||||| ||||||| |
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| T |
55327965 |
tgaaaaaggaaagat |
55327951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 297 - 352
Target Start/End: Complemental strand, 55352395 - 55352340
Alignment:
| Q |
297 |
tccacaccttcaccagcaacttcaaaaaagaaagatggaaaataggaatagcattc |
352 |
Q |
| |
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|||||||||||||| | ||||| |||||||||||||| ||||| || ||||||||| |
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|
| T |
55352395 |
tccacaccttcaccggtaacttgaaaaaagaaagatgaaaaattgggatagcattc |
55352340 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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