View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19251_low_9 (Length: 357)
Name: NF19251_low_9
Description: NF19251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19251_low_9 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 11 - 357
Target Start/End: Original strand, 33376933 - 33377279
Alignment:
| Q |
11 |
aagcaaaggtgtttcgaaaaaaggtgattctctcaatcttgatgttgtttttaaacttaacaatgtcttcaattcaatcaatataactagtttggttagt |
110 |
Q |
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| T |
33376933 |
aagcaaaggtgtttcgaaaaaaggtgattctctcaatcttgatgttgtttttaaacttaacaatgtcttcaattcaatcaatataactagtttggttagt |
33377032 |
T |
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| Q |
111 |
ggaagcttagagagtttgagttctgaaaaggatgatgatgttcattactttgaaccaatttctttaatgatgtttccaaaagcaaattatagttatagtt |
210 |
Q |
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| T |
33377033 |
ggaagcttagagagtttgagttctgaaaaggatgatgatgatcattactttgaaccaatttctttaatgatgtttccaaaagcaaattatagttatagtt |
33377132 |
T |
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| Q |
211 |
tggattctaaagaagttgaaaacgagttctcttttggtagcgaagatgatgaggagggtttatcattaaactttgattcattcagtttttgtaaatatcc |
310 |
Q |
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| T |
33377133 |
tggattctaaagaagttgaaaacgagttctcttttggtagcgacgatgatgaggagggtttatcattaaactttgattcattcagtttttgtaaatatcc |
33377232 |
T |
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| Q |
311 |
tctctcgagtgctattcgtagactccaactagagtacactcatgagt |
357 |
Q |
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| T |
33377233 |
tctttcgagtgctattcgtagactccaactagagtacactcatgagt |
33377279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 32 - 246
Target Start/End: Original strand, 33383101 - 33383318
Alignment:
| Q |
32 |
aggtgattctctcaatcttgatgttgtttttaaacttaacaatgtcttcaattcaatcaatataactagtttggttagtggaagcttagagagtttgagt |
131 |
Q |
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| T |
33383101 |
aggtgattctcttaatcttgatgctgtctttaagcttaacaatgttttccattcaagtaacatcactagtttgatcagtggaagcttagagagtttgagt |
33383200 |
T |
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| Q |
132 |
tctgaaaaggatgatgat---gttcattactttgaaccaatttctttaatgatgtttccaaaagcaaattatagttatagtttggattctaaagaagttg |
228 |
Q |
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| T |
33383201 |
tctgaaaagggtgatgagaaagatcattactttgaaccaatttctataatgatgtttccaaaagcaaattatagttatagtttggattctaaagaagctg |
33383300 |
T |
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| Q |
229 |
aaaacgagttctcttttg |
246 |
Q |
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| T |
33383301 |
aaaatgaattctcttttg |
33383318 |
T |
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