View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19252_high_1 (Length: 735)

Name: NF19252_high_1
Description: NF19252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19252_high_1
NF19252_high_1
[»] chr1 (14 HSPs)
chr1 (1-719)||(6521724-6522440)
chr1 (179-442)||(6516870-6517133)
chr1 (1-438)||(6512475-6512912)
chr1 (197-438)||(6506562-6506809)
chr1 (1-109)||(6506903-6507011)
chr1 (1-117)||(47778042-47778158)
chr1 (20-117)||(47788183-47788280)
chr1 (1-92)||(6517220-6517311)
chr1 (481-544)||(6506438-6506501)
chr1 (344-418)||(47778382-47778456)
chr1 (264-418)||(47788424-47788578)
chr1 (20-113)||(47781969-47782062)
chr1 (264-304)||(47759914-47759954)
chr1 (8-85)||(6523733-6523810)
[»] scaffold0341 (6 HSPs)
scaffold0341 (197-438)||(587-834)
scaffold0341 (197-438)||(8240-8487)
scaffold0341 (1-109)||(928-1036)
scaffold0341 (1-109)||(8581-8690)
scaffold0341 (481-544)||(463-526)
scaffold0341 (481-544)||(8116-8179)
[»] chr7 (1 HSPs)
chr7 (13-61)||(722257-722305)


Alignment Details
Target: chr1 (Bit Score: 665; Significance: 0; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 665; E-Value: 0
Query Start/End: Original strand, 1 - 719
Target Start/End: Original strand, 6521724 - 6522440
Alignment:
Q  1 cacaacattgtcaaaaccgaaaagaagcaattggatggtacaacgatgaagaatgcatgttgcgctactcaaaccgttcaatatttggtctcaacgaaat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  6521724 cacaacattgtcaaaaccgaaaagaagcaattggatggtacaacgatgaagaatgcatgttgcgttactcaaaccgttcaatatttggtctcaacgaaat 6521823  T
Q  101 tggacctgcttattttgtttggaatacaaacaacgcaacaaatgaggttgagtttaacaaagtggtgaannnnnnnnnggatagtttaagaaataaagct 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||| ||||    
T  6521824 tggacctgcttattttgtttggaatacaaacaacgcaacaaatgaggttgagtttaacaaagtggtgaatttttttttggatagtttaagaaatagagct 6521923  T
Q  201 gcatcaggggacagtgaccttaaatatgctgtaggaagtgatgaggttggtccaaataataaccaaaccatatatggtcttgttcaatgcacacctgatt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  6521924 gcatcaggggacagtgaccttaaatatgctgtaggaagtgatgaggttggtccaagtaataaccaaaccatatatggtcttgttcaatgcacacctgatt 6522023  T
Q  301 tgtctaaaacattatgtgatgattgtttggttcaatctatcaaagaaatttcaaattgttgtaacaataggttaggtgctagaattgttagacccagttg 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6522024 tgtctaaaacattatgtgatgattgtttggttcaatctatcaaagaaatttcaaattgttgtaacaataggttaggtgctagaattgttagacccagttg 6522123  T
Q  401 taatttgagatatgaaaccaattcattcttctatcaaccaacgccatcagattcaccctcgccatcaccggtgcctgtgccagtgccatctttctcaact 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6522124 taatttgagatatgaaaccaattcattcttctatcaaccaacgccatcagattcaccctcgccatcaccggtgcctgtgccagtgccatctttctcaact 6522223  T
Q  501 cctcctccgtttgcacaaaacaatacttcctctcaaggtatttatggtggtttttgtatgtgtttttactatatctttgatatattaaatatttaatgtc 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6522224 cctcctccgtttgcacaaaacaatacttcctctcaaggtatttatggtggtttttgtatgtgtttttactatatctttgatatattaaatatttaatgtc 6522323  T
Q  601 tcactatgtgttaattctggtttttgcagataagggcaacacgtcaagaaatgtcgtccctgtaattttgttgatgatgattttattgtgttcattgtta 700  Q
    ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  6522324 tcac--tgtgttaattctggtttttgcagataagggcaacacgtcaagaaatgtcgtccctgtaattttgttgatgttgattttattgtgttcattgtta 6522421  T
Q  701 tcatctttttgatcaatta 719  Q
    |||||||||||||||||||    
T  6522422 tcatctttttgatcaatta 6522440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 180; E-Value: 8e-97
Query Start/End: Original strand, 179 - 442
Target Start/End: Complemental strand, 6517133 - 6516870
Alignment:
Q  179 ggatagtttaagaaataaagctgcatcaggggacagtgaccttaaatatgctgtaggaagtgatgaggttggtccaaataataaccaaaccatatatggt 278  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  6517133 ggataatttaagaaatagagctgcatcaggggacagtgaccttaaatatgctgtaggaagtgatgaggttggtccaaataataatcaaaccatatatggt 6517034  T
Q  279 cttgttcaatgcacacctgatttgtctaaaacattatgtgatgattgtttggttcaatctatcaaagaaatttcaaattgttgtaacaataggttaggtg 378  Q
    || | |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||  |||  ||||||||||| ||| |  |||    
T  6517033 ctagctcaatgcacacctgatttgtttaaaacattttgtgatgattgtttggttcaatctatcaatgaaatcgcaatatgttgtaacaacaggatgagtg 6516934  T
Q  379 ctagaattgttagacccagttgtaatttgagatatgaaaccaattcattcttctatcaaccaac 442  Q
    ||||| ||||||||||||||||| ||||||||||||||||| ||||| |||| |||||||||||    
T  6516933 ctagagttgttagacccagttgttatttgagatatgaaaccgattcactcttttatcaaccaac 6516870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 1 - 438
Target Start/End: Complemental strand, 6512912 - 6512475
Alignment:
Q  1 cacaacattgtcaaaaccgaaaagaagcaattggatggtacaacgatgaagaatgcatgttgcgctactcaaaccgttcaatatttggtctcaacgaaat 100  Q
    |||||| ||||||||| |||||||| || ||||| |||||  | || ||   |||||||||||| |||||| ||||||||||||| ||||| || ||||     
T  6512912 cacaactttgtcaaaatcgaaaagaggctattggttggtatgatgaagatacatgcatgttgcgttactcataccgttcaatattcggtctgaatgaaac 6512813  T
Q  101 tggacctgcttattttgtttggaatacaaacaacgcaacaaatgaggttgagtttaacaaagtggtgaannnnnnnnnggatagtttaagaaataaagct 200  Q
    | |||||  |||||| |  |||| |   ||||| || |||||||| | ||| ||| | |||||  ||||         ||||| ||||||||||| ||||    
T  6512812 tagacctttttatttaggatggagtttgaacaatgctacaaatgaagatgaatttgataaagtactgaaaaatttattggataatttaagaaatagagct 6512713  T
Q  201 gcatcaggggacagtgaccttaaatatgctgtaggaagtgatgaggttggtccaaataataaccaaaccatatatggtcttgttcaatgcacacctgatt 300  Q
     ||||||| || |||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||| ||||||| |||||||||||||||||||||||    
T  6512712 tcatcaggtgatagtgaccttaaatatgctgttggaagtgatgaggttggtcaaaataataatcaaactatatatgctcttgttcaatgcacacctgatt 6512613  T
Q  301 tgtctaaaacattatgtgatgattgtttggttcaatctatcaaagaaatttcaaattgttgtaacaataggttaggtgctagaattgttagacccagttg 400  Q
    |||||||| |||| || ||||||||||||||  |||||||||||| |||  |||  ||||||||||| ||||| |||||||||||||||||||| |||||    
T  6512612 tgtctaaatcattgtgcgatgattgtttggtaaaatctatcaaagcaatcccaagatgttgtaacaacaggttgggtgctagaattgttagaccaagttg 6512513  T
Q  401 taatttgagatatgaaaccaattcattcttctatcaac 438  Q
    | ||||||||||||||||| ||||| ||||||||||||    
T  6512512 ttatttgagatatgaaaccgattcactcttctatcaac 6512475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 197 - 438
Target Start/End: Complemental strand, 6506809 - 6506562
Alignment:
Q  197 agctgcatcaggggacagtgaccttaaatatgctgtaggaagtgatgaggttggtccaaataataaccaaaccatatatggtcttgttcaatgcacacct 296  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||| | |||||||||||||||| |||||||||| || |||||||||||||||||||    
T  6506809 agctgcatcgggggaaagtgaccttaaatatgctgtaggaagtgatgtgattggtccaaataataatcaaaccatatttgctcttgttcaatgcacacct 6506710  T
Q  297 gatttgtctaaaacattatgtgatgattgtttggttcaatctatcaaagaaatttcaaattgttgtaac-----aataggt-taggtgctagaattgtta 390  Q
    ||||||||| ||||||| |||||||| ||||||| | ||||||||||||||||  ||||||||||| ||     ||||||| |||||| |||| || |||    
T  6506709 gatttgtctgaaacattgtgtgatgaatgtttggataaatctatcaaagaaatcccaaattgttgtgacaatagaataggtataggtggtagatttctta 6506610  T
Q  391 gacccagttgtaatttgagatatgaaaccaattcattcttctatcaac 438  Q
    ||||||||||| ||||||||||||||||||||||| | ||||||||||    
T  6506609 gacccagttgttatttgagatatgaaaccaattcacttttctatcaac 6506562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 6507011 - 6506903
Alignment:
Q  1 cacaacattgtcaaaaccgaaaagaagcaattggatggtacaacgatgaagaatgcatgttgcgctactcaaaccgttcaatatttggtctcaacgaaat 100  Q
    |||||| ||||||||| |||||||||||||||||||||||| |||||||| ||||||||||||| | |||| |||||| |||||||||| |||| |||||    
T  6507011 cacaactttgtcaaaatcgaaaagaagcaattggatggtacgacgatgaaaaatgcatgttgcgttcctcacaccgtttaatatttggtatcaatgaaat 6506912  T
Q  101 tggacctgc 109  Q
     ||||||||    
T  6506911 gggacctgc 6506903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 47778042 - 47778158
Alignment:
Q  1 cacaacattgtcaaaaccgaaaagaagcaattggatggtacaacgatgaagaatgcatgttgcgctactcaaaccgttcaatatttggtctcaacgaaat 100  Q
    |||||| ||||| ||||  ||| ||||||||||| |||||| | |||||| ||||||||||||| |||||| |||||||||||||| | ||||| |||||    
T  47778042 cacaactttgtccaaacaaaaaggaagcaattggttggtacgaggatgaaaaatgcatgttgcgttactcagaccgttcaatatttagcctcaatgaaat 47778141  T
Q  101 tggacctgcttattttg 117  Q
    ||||||||| |||||||    
T  47778142 tggacctgcatattttg 47778158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 20 - 117
Target Start/End: Original strand, 47788183 - 47788280
Alignment:
Q  20 aaaagaagcaattggatggtacaacgatgaagaatgcatgttgcgctactcaaaccgttcaatatttggtctcaacgaaattggacctgcttattttg 117  Q
    |||||||||||||||||||||| | |||||  |||| ||||| || || ||| ||||||||||| | ||||| |||||||||||||||||||||||||    
T  47788183 aaaagaagcaattggatggtacgaggatgagaaatgtatgttacgttattcagaccgttcaataatgggtctaaacgaaattggacctgcttattttg 47788280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 6517311 - 6517220
Alignment:
Q  1 cacaacattgtcaaaaccgaaaagaagcaattggatggtacaacgatgaagaatgcatgttgcgctactcaaaccgttcaatatttggtctc 92  Q
    |||||| |||||||||  ||||| |||||||||| |||||| | |||||   |||||||||||| ||||||| |||||||||||||||||||    
T  6517311 cacaacgttgtcaaaatagaaaacaagcaattggttggtacgatgatgatagatgcatgttgcgttactcaagccgttcaatatttggtctc 6517220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 481 - 544
Target Start/End: Complemental strand, 6506501 - 6506438
Alignment:
Q  481 cagtgccatctttctcaactcctcctccgtttgcacaaaacaatacttcctctcaaggtattta 544  Q
    |||||||||| |||||| |||||||||| |||||| |||||| ||||||||||| |||||||||    
T  6506501 cagtgccatcattctcagctcctcctccatttgcagaaaacactacttcctctccaggtattta 6506438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 344 - 418
Target Start/End: Original strand, 47778382 - 47778456
Alignment:
Q  344 agaaatttcaaattgttgtaacaataggttaggtgctagaattgttagacccagttgtaatttgagatatgaaac 418  Q
    |||||||||||  |||||||| |||||| | |||||||||||||||||||| || ||||||||||| | ||||||    
T  47778382 agaaatttcaagatgttgtaaaaataggattggtgctagaattgttagacctagctgtaatttgaggtttgaaac 47778456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 264 - 418
Target Start/End: Original strand, 47788424 - 47788578
Alignment:
Q  264 caaaccatatatggtcttgttcaatgcacacctgatttgtctaaaacattatgtgatgattgtttggttcaatctatcaaagaaatttcaaattgttgta 363  Q
    ||||| ||||||||||||||||| || || ||||| ||||||    ||   ||||||||||||||| ||||||| ||    ||| ||||||  |||||||    
T  47788424 caaacaatatatggtcttgttcagtgtactcctgacttgtctggtccacagtgtgatgattgtttgcttcaatccattgctgaagtttcaagatgttgta 47788523  T
Q  364 acaataggttaggtgctagaattgttagacccagttgtaatttgagatatgaaac 418  Q
     ||||||| | |||||||||||| ||||||| || ||||||||||| | ||||||    
T  47788524 gcaataggattggtgctagaattattagaccaagctgtaatttgaggtttgaaac 47788578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 20 - 113
Target Start/End: Original strand, 47781969 - 47782062
Alignment:
Q  20 aaaagaagcaattggatggtacaacgatgaagaatgcatgttgcgctactcaaaccgttcaatatttggtctcaacgaaattggacctgcttat 113  Q
    |||||||||||||||||||||| | |||||  |||||||||| || || ||| ||||||| ||||| || || ||||||||||| || ||||||    
T  47781969 aaaagaagcaattggatggtacgaggatgagaaatgcatgttacgttattcagaccgttctatattaggcctaaacgaaattgggccagcttat 47782062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 264 - 304
Target Start/End: Complemental strand, 47759954 - 47759914
Alignment:
Q  264 caaaccatatatggtcttgttcaatgcacacctgatttgtc 304  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  47759954 caaaccatatatggtcttgttcagtgcacacctgatttgtc 47759914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 85
Target Start/End: Original strand, 6523733 - 6523810
Alignment:
Q  8 ttgtcaaaaccgaaaagaagcaattggatggtacaacgatgaagaatgcatgttgcgctactcaaaccgttcaatatt 85  Q
    ||||| ||||| ||||||||||||||| |||||  | |||||| ||||||||||||| || ||| ||||||| |||||    
T  6523733 ttgtccaaaccaaaaagaagcaattggttggtatgaagatgaaaaatgcatgttgcgttattcagaccgttccatatt 6523810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341 (Bit Score: 136; Significance: 1e-70; HSPs: 6)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 197 - 438
Target Start/End: Complemental strand, 834 - 587
Alignment:
Q  197 agctgcatcaggggacagtgaccttaaatatgctgtaggaagtgatgaggttggtccaaataataaccaaaccatatatggtcttgttcaatgcacacct 296  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||| | |||||||||||||||| |||||||||| || |||||||||||||||||||    
T  834 agctgcatcgggggaaagtgaccttaaatatgctgtaggaagtgatgtgattggtccaaataataatcaaaccatatttgctcttgttcaatgcacacct 735  T
Q  297 gatttgtctaaaacattatgtgatgattgtttggttcaatctatcaaagaaatttcaaattgttgtaac-----aataggt-taggtgctagaattgtta 390  Q
    ||||||||| ||||||| |||||||| ||||||| | ||||||||||||||||  ||||||||||| ||     ||||||| |||||| |||| || |||    
T  734 gatttgtctgaaacattgtgtgatgaatgtttggataaatctatcaaagaaatcccaaattgttgtgacaatagaataggtataggtggtagatttctta 635  T
Q  391 gacccagttgtaatttgagatatgaaaccaattcattcttctatcaac 438  Q
    ||||||||||| ||||||||||||||||||||||| | ||||||||||    
T  634 gacccagttgttatttgagatatgaaaccaattcacttttctatcaac 587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 197 - 438
Target Start/End: Complemental strand, 8487 - 8240
Alignment:
Q  197 agctgcatcaggggacagtgaccttaaatatgctgtaggaagtgatgaggttggtccaaataataaccaaaccatatatggtcttgttcaatgcacacct 296  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||| | |||||||||||||||| |||||||||| || |||||||||||||||||||    
T  8487 agctgcatcgggggaaagtgaccttaaatatgctgtaggaagtgatgtgattggtccaaataataatcaaaccatatttgctcttgttcaatgcacacct 8388  T
Q  297 gatttgtctaaaacattatgtgatgattgtttggttcaatctatcaaagaaatttcaaattgttgtaac-----aataggt-taggtgctagaattgtta 390  Q
    ||||||||| ||||||| |||||||| ||||||| | ||||||||||||||||  ||||||||||| ||     ||||||| |||||| |||| || |||    
T  8387 gatttgtctgaaacattgtgtgatgaatgtttggataaatctatcaaagaaatcccaaattgttgtgacaatagaataggtataggtggtagatttctta 8288  T
Q  391 gacccagttgtaatttgagatatgaaaccaattcattcttctatcaac 438  Q
    ||||||||||| ||||||||||||||||||||||| | ||||||||||    
T  8287 gacccagttgttatttgagatatgaaaccaattcacttttctatcaac 8240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 1036 - 928
Alignment:
Q  1 cacaacattgtcaaaaccgaaaagaagcaattggatggtacaacgatgaagaatgcatgttgcgctactcaaaccgttcaatatttggtctcaacgaaat 100  Q
    |||||| ||||||||| |||||||||||||||||||||||| |||||||| ||||||||||||| | |||| |||||| |||||||||| |||| |||||    
T  1036 cacaactttgtcaaaatcgaaaagaagcaattggatggtacgacgatgaaaaatgcatgttgcgttcctcacaccgtttaatatttggtatcaatgaaat 937  T
Q  101 tggacctgc 109  Q
     ||||||||    
T  936 gggacctgc 928  T

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Target: scaffold0341; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 8690 - 8581
Alignment:
Q  1 cacaacattgtcaaaac-cgaaaagaagcaattggatggtacaacgatgaagaatgcatgttgcgctactcaaaccgttcaatatttggtctcaacgaaa 99  Q
    |||||| |||||||||  |||||||||||||||||||||||| |||||||| ||||||||||||| | |||| |||||| |||||||||| |||| ||||    
T  8690 cacaactttgtcaaaatacgaaaagaagcaattggatggtacgacgatgaaaaatgcatgttgcgttcctcacaccgtttaatatttggtatcaatgaaa 8591  T
Q  100 ttggacctgc 109  Q
    | ||||||||    
T  8590 tgggacctgc 8581  T

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Target: scaffold0341; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 481 - 544
Target Start/End: Complemental strand, 526 - 463
Alignment:
Q  481 cagtgccatctttctcaactcctcctccgtttgcacaaaacaatacttcctctcaaggtattta 544  Q
    |||||||||| |||||| |||||||||| |||||| |||||| ||||||||||| |||||||||    
T  526 cagtgccatcattctcagctcctcctccatttgcagaaaacactacttcctctccaggtattta 463  T

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Target: scaffold0341; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 481 - 544
Target Start/End: Complemental strand, 8179 - 8116
Alignment:
Q  481 cagtgccatctttctcaactcctcctccgtttgcacaaaacaatacttcctctcaaggtattta 544  Q
    |||||||||| |||||| |||||||||| |||||| |||||| ||||||||||| |||||||||    
T  8179 cagtgccatcattctcagctcctcctccatttgcagaaaacactacttcctctccaggtattta 8116  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 722257 - 722305
Alignment:
Q  13 aaaaccgaaaagaagcaattggatggtacaacgatgaagaatgcatgtt 61  Q
    |||||||||||||||||||||||| |||| | |||||| ||||||||||    
T  722257 aaaaccgaaaagaagcaattggattgtacgatgatgaaaaatgcatgtt 722305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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