View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19252_high_10 (Length: 443)
Name: NF19252_high_10
Description: NF19252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19252_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 402; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 6 - 431
Target Start/End: Complemental strand, 29330329 - 29329904
Alignment:
| Q |
6 |
agcaacacagaatacttaacaaaatgtatcattttaaaggtatattttgaaatcaatgataggccatttacaattatgacgctagctgaaacttaacatt |
105 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
29330329 |
agcaatacagaatacttaacaaaatgtatcattttaaaggtatattttgaaatcaatgataggccatttaccattatgacgctagctgaaacttaacatt |
29330230 |
T |
|
| Q |
106 |
gctgactgaatgaatattgtgcaggctttggatcaaatctgtcaatgcccaaaagtgagtgttgacaaatttatagataaaattatgccaatgttgattg |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29330229 |
gctgactgaatgaatattgtgcaggctttggatcaaatctgtcaatgcccaaaagtgagtgttgacaaatttatagataaaattatgccaatgttgattg |
29330130 |
T |
|
| Q |
206 |
catgcgctcagccgcttcttgacttaacaggcgaggagaccaatgatgataggtttgccatttaattttagtgctacaaggataaaatattttctgttag |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
29330129 |
catgcgctcagccgcttcttgacttaacaggcgaggagaccaatgatgataggtttgccattatattttagtgctacaaggataaaatattttctgttag |
29330030 |
T |
|
| Q |
306 |
ttccgatcgaatgagcaacgtttgtggaattatgaggcaaatcacacagttaaataggaatgaaaattgggaacaataacgggttttcgcatgtccccaa |
405 |
Q |
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|||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29330029 |
ttccaatcgaatgagcaacgtttgtggaattatgaggtaaatcacacagttaaataggaatgaaaattgggaacaataacgggttttcgcatgtccccaa |
29329930 |
T |
|
| Q |
406 |
tttaagaaatgaatgaatgttgaaac |
431 |
Q |
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| T |
29329929 |
tttaagaaatgaatgaatgttgaaac |
29329904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 112 - 201
Target Start/End: Complemental strand, 29319202 - 29319113
Alignment:
| Q |
112 |
tgaatgaatattgtgcaggctttggatcaaatctgtcaatgcccaaaagtgagtgttgacaaatttatagataaaattatgccaatgttg |
201 |
Q |
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||||| || |||||||||||| ||||||| |||||||||||||| | ||||||| || |||| ||||| | ||||||||||||||||||| |
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| T |
29319202 |
tgaataaacattgtgcaggctctggatcacatctgtcaatgccctagagtgagtattaacaactttattgctaaaattatgccaatgttg |
29319113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 6 - 231
Target Start/End: Complemental strand, 29301692 - 29301458
Alignment:
| Q |
6 |
agcaacacagaatacttaacaaaatgtatcattttaaaggtatattttgaaatcaatgataggccatttac---------aattatgacgctagctgaaa |
96 |
Q |
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||||| |||||||||||| ||||||||||||| || ||||||| |||||||||||||||||| ||||||| || || | ||||| ||||| |
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| T |
29301692 |
agcaatacagaatacttagcaaaatgtatcatcgtacaggtata-tttgaaatcaatgataggacatttacctccactcacatgataatgctaggtgaaa |
29301594 |
T |
|
| Q |
97 |
-cttaacattgctgactgaatgaatattgtgcaggctttggatcaaatctgtcaatgcccaaaagtgagtgttgacaaatttatagataaaattatgcca |
195 |
Q |
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||| ||| || | ||||| || |||| ||||||| ||||||||||||||| |||||||| |||||| |||||||||||||| ||||| || ||| |
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| T |
29301593 |
gtttattattcctaattgaataaacattgcgcaggctctggatcaaatctgtcgatgcccaagtgtgagtattgacaaatttatacataaacttgtgctg |
29301494 |
T |
|
| Q |
196 |
atgttgattgcatgcgctcagccgcttcttgactta |
231 |
Q |
| |
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|||||| ||| || | |||| || | |||||||||| |
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| T |
29301493 |
atgttgcttggatccactcaaccccatcttgactta |
29301458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 6 - 67
Target Start/End: Complemental strand, 29319300 - 29319240
Alignment:
| Q |
6 |
agcaacacagaatacttaacaaaatgtatcattttaaaggtatattttgaaatcaatgatag |
67 |
Q |
| |
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||||| ||||| |||||||||||||||||||| |||||||||| | ||||||||||||||| |
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| T |
29319300 |
agcaatacagattacttaacaaaatgtatcatcctaaaggtata-tctgaaatcaatgatag |
29319240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 106; Significance: 7e-53; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 128 - 257
Target Start/End: Original strand, 42284655 - 42284784
Alignment:
| Q |
128 |
aggctttggatcaaatctgtcaatgcccaaaagtgagtgttgacaaatttatagataaaattatgccaatgttgattgcatgcgctcagccgcttcttga |
227 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| | |
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| T |
42284655 |
aggctttggatcaaatctgtcaatgcccaaaagtgagtgttgacaaatttatagataaaattatgccaatgttgattgcatgtgctcagccccttcttaa |
42284754 |
T |
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| Q |
228 |
cttaacaggcgaggagaccaatgatgatag |
257 |
Q |
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|||||| ||||||||| |||| |||||||| |
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| T |
42284755 |
cttaacgggcgaggagtccaaggatgatag |
42284784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 6 - 45
Target Start/End: Original strand, 42284618 - 42284657
Alignment:
| Q |
6 |
agcaacacagaatacttaacaaaatgtatcattttaaagg |
45 |
Q |
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||||| |||||||||||||||||||||||||||||||||| |
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| T |
42284618 |
agcaatacagaatacttaacaaaatgtatcattttaaagg |
42284657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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