View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19252_high_4 (Length: 575)
Name: NF19252_high_4
Description: NF19252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19252_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 480; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 16 - 562
Target Start/End: Original strand, 672620 - 673156
Alignment:
| Q |
16 |
atataaattgcacaaggagttttgaactcattcatccatcttcaaatattctcaacattgcatacttgatcaaaatgacttccagcacagaaagcaatag |
115 |
Q |
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| T |
672620 |
atataaattgcacaaggtgttgtgaactcattcatccatcttcaa----------cattgcatgcttgatcaaaatggcttccaacacagaaagcaatag |
672709 |
T |
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| Q |
116 |
taacaaggtaattgttcacaacttgctccctcatttggttgtctataatgatggcaccatagatcgtccaagaaactttccaattgttcctccacaacaa |
215 |
Q |
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| T |
672710 |
taacaaggtaattgttcacaacttgctccctcatttggttgtctataatgatggcaccatagatcgtctaagaaactttccaattgttcctccacaacaa |
672809 |
T |
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| Q |
216 |
gaggaccctaaaactggtgtctcatccaaagacattgtcttttccaatgacccttacctcactgctagactttaccttccaaaactaacacaaaccaatg |
315 |
Q |
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| T |
672810 |
gaggaccctaaaactggtgtctcatccaaagacattgtcttttccaatgacccttacctcactgctagactttaccttccaaaactaacacaaaccaatg |
672909 |
T |
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| Q |
316 |
atcaaaaccaaaaactctccatcttggtttatttttatggtggtgcattcagctttgaatcagcatattcatccatccaccatacatattgtaacctctt |
415 |
Q |
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| T |
672910 |
atcaaaaccaaaaactctccatcttggtttatttttatggtggtgcattcagctttgaatcagcatattcatccatccaccatgcatattgtaacctctt |
673009 |
T |
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| Q |
416 |
agcttctcaagcaaatattttgattgcttccatagaacatagaaatgctccagagcattatcttcctgcaggttataatgattgttgggatggtctctat |
515 |
Q |
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| T |
673010 |
agcttctcaagcaaatattttgattgcttccatagaacatagaaatgctccagagcattatcttcctgcaggttataatgattgttgggatggtctctat |
673109 |
T |
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| Q |
516 |
tgggttgcttctcatgcaacccaaaatcccataaacagtgacccttg |
562 |
Q |
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| T |
673110 |
tgggttgcttctcatgcaactcaaaatcccataaacagtgacccttg |
673156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 233 - 530
Target Start/End: Original strand, 663056 - 663344
Alignment:
| Q |
233 |
tgtctcatccaaagacattgtcttttccaatgacccttacctcactgctagactttaccttccaaaactaacacaaaccaatgatcaaaaccaaaaactc |
332 |
Q |
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| T |
663056 |
tgtctcatcaaaagacattctcttttccaatgaaccttcactctttgctagactttacctaccaaaactaac---------cgatcaaaaccaaaaaata |
663146 |
T |
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| Q |
333 |
tccatcttggtttatttttatggtggtgcattcagctttgaatcagcatattcatc-catccaccatacatattgtaacctcttagcttctcaagcaaat |
431 |
Q |
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| T |
663147 |
cctatcttagtctactttcatggtggtgcattttgttgtgaatcaacttttgcatcacat-catcacaaatattgtaacattattgcttctcaaggaaat |
663245 |
T |
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| Q |
432 |
attttgattgcttccatagaacatagaaatgctccagagcattatcttcctgcaggttataatgattgttgggatggtctctattgggttgcttctcat |
530 |
Q |
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| T |
663246 |
gttctaattttttctattgaatatagaaaagctccagaacattttcttccaacgcaatataatgattgttgggatggtctcaattgggttgcttctcat |
663344 |
T |
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