View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19252_high_7 (Length: 477)
Name: NF19252_high_7
Description: NF19252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19252_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 410; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 8 - 462
Target Start/End: Complemental strand, 1460370 - 1459910
Alignment:
| Q |
8 |
gagatgaataattttctaaagacaactgattgatttggatttgg------tgaaatacggcccaacccaattcaagtgtaaaccttgcctatcgaaaccc |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1460370 |
gagatgaataattttctaaagacaactgattgatttggatttggatttggtgaaatacggcccaacccaattcaagtgtaaaccttgcctatcgaaaccc |
1460271 |
T |
|
| Q |
102 |
taattcttgttgcttttaaaagctattcgcttccaaccctaaccctgtttgtcaacctaatcatgaagaacaccttgccgtcgtaacagaatgtctcagc |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1460270 |
taattcttgttgcttttaaaagctattcgcttccaaccctaaccctgtctgtcaacctaatcatgaagaacaccttgccgtcgtaacagaatgtctcagc |
1460171 |
T |
|
| Q |
202 |
cggaaacttcaacggtggaggctgtggaggaggaggtagataggatcagcattttaccagatgatatcctagttcacattctctctcctcttcccaccaa |
301 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1460170 |
cggaaacttcagcggtggaggctatggaggaggaggtagataggatcagcattttaccagatgatatcctagttcacattctctctcctcttcccaccaa |
1460071 |
T |
|
| Q |
302 |
acaagcctttgtgacttccgttctttcaaagagatggaagaatctatggtgtctcgttccagctctcgaattcgtcggaaccaaaacggtgacggtaacc |
401 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |
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| T |
1460070 |
acaagcctttgtgacttccgttctttcaaagagatggaagaatctatggtgtctcgttccagctctcgaatttgtcggaaccaaaacggtgacggtatcc |
1459971 |
T |
|
| Q |
402 |
aaatacgttgtttcgcgacaagctgctgataatcattacatgcattattgggaaagaatat |
462 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |
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| T |
1459970 |
aaatacgttgtttcgcgacaagctgctggtaatcattacatgcataattgggaaagaatat |
1459910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 236 - 363
Target Start/End: Original strand, 12094079 - 12094206
Alignment:
| Q |
236 |
ggtagataggatcagcattttaccagatgatatcctagttcacattctctctcctcttcccaccaaacaagcctttgtgacttccgttctttcaaagaga |
335 |
Q |
| |
|
||||||||||||||||| ||||||||| |||||||| |||||||||| ||| || |||||||||||||||||||||| ||||| |||||||||||||| |
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|
| T |
12094079 |
ggtagataggatcagcaatttaccagacgatatcctgattcacattctgtcttcttttcccaccaaacaagcctttgtcacttcaattctttcaaagaga |
12094178 |
T |
|
| Q |
336 |
tggaagaatctatggtgtctcgttccag |
363 |
Q |
| |
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|||||| ||||||||||| |||||||| |
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| T |
12094179 |
tggaagcatctatggtgttacgttccag |
12094206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 237 - 351
Target Start/End: Complemental strand, 1446786 - 1446672
Alignment:
| Q |
237 |
gtagataggatcagcattttaccagatgatatcctagttcacattctctctcctcttcccaccaaacaagcctttgtgacttccgttctttcaaagagat |
336 |
Q |
| |
|
||||||||||| |||| ||||||||| ||||||||| |||| ||||||||| ||||||||||||||||||||||| | |||||| ||||||||||||||| |
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|
| T |
1446786 |
gtagataggataagcagtttaccagacgatatcctaattcaaattctctcttctcttcccaccaaacaagcctttctcacttccattctttcaaagagat |
1446687 |
T |
|
| Q |
337 |
ggaagaatctatggt |
351 |
Q |
| |
|
||||| ||||||||| |
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|
| T |
1446686 |
ggaagcatctatggt |
1446672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 236 - 347
Target Start/End: Original strand, 12104419 - 12104530
Alignment:
| Q |
236 |
ggtagataggatcagcattttaccagatgatatcctagttcacattctctctcctcttcccaccaaacaagcctttgtgacttccgttctttcaaagaga |
335 |
Q |
| |
|
|||||||| |||||||| |||| |||| |||||||| |||||||||||||| |||||||||||||||||||||| | ||||| |||||||||||||| |
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|
| T |
12104419 |
ggtagatatgatcagcaatttatcagacgatatcctgattcacattctctcttttcttcccaccaaacaagcctttctcacttcaattctttcaaagaga |
12104518 |
T |
|
| Q |
336 |
tggaagaatcta |
347 |
Q |
| |
|
|||||| ||||| |
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|
| T |
12104519 |
tggaagcatcta |
12104530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 236 - 339
Target Start/End: Original strand, 820412 - 820515
Alignment:
| Q |
236 |
ggtagataggatcagcattttaccagatgatatcctagttcacattctctctcctcttcccaccaaacaagcctttgtgacttccgttctttcaaagaga |
335 |
Q |
| |
|
|||||||||||||| || ||||| ||||||||||| |||| ||||||||| || |||| ||||||||||||||||| |||||| ||||||||||| || |
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|
| T |
820412 |
ggtagataggatcaacagtttactggatgatatcctgattcatattctctcttctgttcctaccaaacaagcctttgtcacttccattctttcaaagcga |
820511 |
T |
|
| Q |
336 |
tgga |
339 |
Q |
| |
|
|||| |
|
|
| T |
820512 |
tgga |
820515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 236 - 353
Target Start/End: Original strand, 409117 - 409234
Alignment:
| Q |
236 |
ggtagataggatcagcattttaccagatgatatcctagttcacattctctctcctcttcccaccaaacaagcctttgtgacttccgttctttcaaagaga |
335 |
Q |
| |
|
|||||||||||| | | ||||||||| || || || |||||||||||||| | |||||||||||||||||||||| || ||| |||||||||||||| |
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|
| T |
409117 |
ggtagataggattggaagtttaccagacgagattctgattcacattctctcttttgttcccaccaaacaagcctttgtcacatccattctttcaaagaga |
409216 |
T |
|
| Q |
336 |
tggaagaatctatggtgt |
353 |
Q |
| |
|
|||| ||||||||||| |
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|
| T |
409217 |
tggactcatctatggtgt |
409234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 240 - 361
Target Start/End: Complemental strand, 997570 - 997449
Alignment:
| Q |
240 |
gataggatcagcattttaccagatgatatcctagttcacattctctctcctcttcccaccaaacaagcctttgtgacttccgttctttcaaagagatgga |
339 |
Q |
| |
|
||||||||| | | |||||| || || |||||| | |||||||||||| | ||||||||||||||||||| | |||||| ||||||||||| |||||| |
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|
| T |
997570 |
gataggatcggaagtttaccggacgagatcctaatccacattctctcttttgttcccaccaaacaagccttcgcaacttccattctttcaaagcgatgga |
997471 |
T |
|
| Q |
340 |
agaatctatggtgtctcgttcc |
361 |
Q |
| |
|
||||||| ||| | |||||| |
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|
| T |
997470 |
ttaatctatagtgccacgttcc |
997449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 238 - 339
Target Start/End: Complemental strand, 975723 - 975622
Alignment:
| Q |
238 |
tagataggatcagcattttaccagatgatatcctagttcacattctctctcctcttcccaccaaacaagcctttgtgacttccgttctttcaaagagatg |
337 |
Q |
| |
|
|||||||||| |||| ||| || || || ||||| ||| |||||||||| ||||||||| ||||||||| ||| |||||| ||||||||||| |||| |
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|
| T |
975723 |
tagataggattagcagttttcccgacgacatcctgattcgcattctctcttctcttcccattgaacaagcctgtgtcacttccattctttcaaagcgatg |
975624 |
T |
|
| Q |
338 |
ga |
339 |
Q |
| |
|
|| |
|
|
| T |
975623 |
ga |
975622 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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