View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19252_low_11 (Length: 394)
Name: NF19252_low_11
Description: NF19252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19252_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 18 - 376
Target Start/End: Original strand, 27844139 - 27844497
Alignment:
| Q |
18 |
agaaaaacacaaacctaattacgttttagcaaaagtcctcattcctcaacaacaaggaacattcaacctcacgagcccgttttcggcccaacaaaatcgg |
117 |
Q |
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| T |
27844139 |
agaaaaacacaaacctaattacgtgttagcaaaagtcctcattcctcaacaacaaggaacattcaacctcacgagcccgttttcggcccaacaaaatcgg |
27844238 |
T |
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| Q |
118 |
gcccatcccagaatccacaaaagcccgattctctacaacagctttcaaacccctttccaaagcttcaaccaccttctcctctcttaaatcatcaccacct |
217 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
27844239 |
gcccatcccagaatccacaaaagcccgattctctataacagctttcaaacccctttccaaagcttcaaccaccttctcctctcttacatcatcaccacct |
27844338 |
T |
|
| Q |
218 |
tcaccattaggccactccaccaccacaacagtctttgtcctacctccaaccgtcatcatctccgctcgaaccggtttcgctaaaacagaccggattgctt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
27844339 |
tcaccattaggccactccaccaccacaacagtctttgtcctacctccaaccgtcatcatctcagctcgaaccggtttcgctaaaacagaccggattgctt |
27844438 |
T |
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| Q |
318 |
gtgttaggtcatggttcagacccggacgctcctcacaacacactgtcactttcatcctc |
376 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27844439 |
gtgttagatcatggttcagacccggacgctcctcacaacacactgtcactttcatcctc |
27844497 |
T |
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