View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19252_low_15 (Length: 245)
Name: NF19252_low_15
Description: NF19252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19252_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 3 - 230
Target Start/End: Original strand, 45445149 - 45445376
Alignment:
| Q |
3 |
aaatatttgaaataagttggtacaaacttgataaatgattcgagcattgtctttgtaacctgcttcacaataaatat----tatccgatgctttcatcat |
98 |
Q |
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| T |
45445149 |
aaatatttaaaataagttggtacaaacttgataaatgattcgagcattgtctttgtaatctgcttcacaataaatatatattatccgatgctttcatcat |
45445248 |
T |
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| Q |
99 |
taaagattagaaacccttgcatgaaaattctgagtatagaagtggatccccagctagtacgtggataccatactctcatcaaaagaatcgaaataaaagg |
198 |
Q |
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| T |
45445249 |
taaagattagaaacccttgcatgaaaattctgagtatagaagtggatccccagcta----gtggataccatactctcatcaaaagaatcgaaataaaagg |
45445344 |
T |
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| Q |
199 |
ctagtgaagataacagaaactcctgtaggacg |
230 |
Q |
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| T |
45445345 |
ctagtgaagataacagaaactcctgtaggacg |
45445376 |
T |
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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 77
Target Start/End: Original strand, 51582558 - 51582632
Alignment:
| Q |
3 |
aaatatttgaaataagttggtacaaacttgataaatgattcgagcattgtctttgtaacctgcttcacaataaat |
77 |
Q |
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|||||||| ||||||| ||| ||||||||||||||||||| ||| |||||||||||||||||| || |||||| |
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| T |
51582558 |
aaatatttaaaataagccggtgcaaacttgataaatgattcaagctctgtctttgtaacctgcttgacgataaat |
51582632 |
T |
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