View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19252_low_16 (Length: 239)
Name: NF19252_low_16
Description: NF19252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19252_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 139; Significance: 7e-73; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 6 - 203
Target Start/End: Complemental strand, 10520794 - 10520594
Alignment:
| Q |
6 |
gtccattttctaactttagagtattctctgaaagaaatcatagggagtgatttcacccc---aagtctctccttcaagagagtgataacgtcatcatcat |
102 |
Q |
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| T |
10520794 |
gtccattttctaactttagagtatttttcaaaagaaatcatagggagtgatttcacccccccaagtctcttcttcaacagattgataacctcatgatcat |
10520695 |
T |
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| Q |
103 |
tatgcactaaacttgatatgaaaccctcattttttagtttatctacttgataaacaccttcatttacgaagttttcaacttcttctcttctcttccctct |
202 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
10520694 |
catgcactaaacttgatatgaaaccctcattttttagtttatctacttgatagacaccttcatttatgaagttttcaacttcttctcttctcttccctct |
10520595 |
T |
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| Q |
203 |
a |
203 |
Q |
| |
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| |
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| T |
10520594 |
a |
10520594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 6 - 221
Target Start/End: Original strand, 35803021 - 35803234
Alignment:
| Q |
6 |
gtccattttctaactttagagtattctctgaaagaaatcatagg---gagtgatttcaccccaagtctctccttcaagagagtgataacgtcatcatcat |
102 |
Q |
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||||||||||| ||||||||||||| ||| |||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |||||||||| |
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| T |
35803021 |
gtccattttctgactttagagtattttctaaaagaaatcataggagggagtgatttcaccccaagtctc--cttcaagagagtgataacatcatcatcat |
35803118 |
T |
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| Q |
103 |
tatgcactaaacttgatatgaaaccctcattttttagtttatctacttgataaacaccttcatttacgaagttttcaacttcttctcttctcttccctct |
202 |
Q |
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|||||| ||||||||||||||||| | ||| |||||||||| | |||||||||||||||||| |||||||| ||||||||||||| |||||||||| |
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| T |
35803119 |
a---cactaagcttgatatgaaaccctcttctttcagtttatctaatcgataaacaccttcatttatgaagttttgaacttcttctcttttcttccctct |
35803215 |
T |
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| Q |
203 |
agaagaagagactttatcc |
221 |
Q |
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||||||||||||||||||| |
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| T |
35803216 |
agaagaagagactttatcc |
35803234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 6 - 210
Target Start/End: Complemental strand, 35854290 - 35854083
Alignment:
| Q |
6 |
gtccattttctaactttagagtattctctgaaagaaatcatagggagtgatttcaccccaagtctctccttcaagagagtgataacgtcatcatcattat |
105 |
Q |
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||||||||||| |||||||||||| ||| ||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||| |||||||| || |
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| T |
35854290 |
gtccattttctgcctttagagtattttctaaaagaaatcatagggagtgatttaaccccaagcctctccttcaagagagttataacctcatcatc---at |
35854194 |
T |
|
| Q |
106 |
gcactaaacttgatatgaaaccctcattttttagtttatctacttgat------aaacaccttcatttacgaagttttcaacttcttctcttctcttccc |
199 |
Q |
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| T |
35854193 |
acactaagcttgatatgaaaccctcttctttcagtttatctaatcgataaacagaaacaccttcatttatgaagtcttgaacttcttctcttttcttccc |
35854094 |
T |
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| Q |
200 |
tctagaagaag |
210 |
Q |
| |
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| ||||||||| |
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| T |
35854093 |
tatagaagaag |
35854083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 196
Target Start/End: Original strand, 45862385 - 45862437
Alignment:
| Q |
144 |
tctacttgataaacaccttcatttacgaagttttcaacttcttctcttctctt |
196 |
Q |
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||||||||||| ||||||||||||| |||||| ||||| ||||||||| |||| |
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| T |
45862385 |
tctacttgatagacaccttcatttatgaagttctcaacatcttctcttttctt |
45862437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 180
Target Start/End: Original strand, 45881915 - 45881981
Alignment:
| Q |
114 |
cttgatatgaaaccctcattttttagtttatctacttgataaacaccttcatttacgaagttttcaa |
180 |
Q |
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|||| |||||||||||| | ||| ||| | ||||||||||| ||||||||||||| |||||| |||| |
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| T |
45881915 |
cttgttatgaaaccctcttctttcagtctgtctacttgatagacaccttcatttatgaagttctcaa |
45881981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 97
Target Start/End: Complemental strand, 54303840 - 54303766
Alignment:
| Q |
23 |
agagtattctctgaaagaaatcatagggagtgatttcaccccaagtctctccttcaagagagtgataacgtcatc |
97 |
Q |
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|||||||||| ||||||||| | ||| ||||||||||||||||| || ||||||||| |||||||| ||||| |
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| T |
54303840 |
agagtattctttgaaagaaacaaaaggcagtgatttcaccccaagcctttccttcaagttggtgataacatcatc |
54303766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 192
Target Start/End: Complemental strand, 24351184 - 24351088
Alignment:
| Q |
96 |
tcatcattatgcactaaacttgatatgaaaccctcattttttagtttatctacttgataaacaccttcatttacgaagttttcaacttcttctcttc |
192 |
Q |
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||||||| || || |||| ||||||| | ||||| | ||| || ||||| |||||||||||||||||||||| |||||| |||| |||||||||| |
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| T |
24351184 |
tcatcatcatacattaaatttgatataaggccctcttctttcagcttatcaacttgataaacaccttcatttatgaagttctcaatatcttctcttc |
24351088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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