View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19252_low_17 (Length: 238)
Name: NF19252_low_17
Description: NF19252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19252_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 148; Significance: 3e-78; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 4858119 - 4858325
Alignment:
| Q |
1 |
tttttaatgttttgggcacaaatcctcggtttaagccaataactccatcctctgccacaatatctgcatcaaccaaaaaattaatatggtatttacacaa |
100 |
Q |
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| T |
4858119 |
tttttaatgttttgggcacgaatcctcggtttaagccagttactccatcctgtgccacaatatctgcatcaaccaaaaaattaatatggtatttacacaa |
4858218 |
T |
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| Q |
101 |
gaacactgaagaaaataaacttcaactattccccagtgtgtgcacaacaaatataatgttgcagtttttgcaaaaataagggaattaattattcttatac |
200 |
Q |
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| T |
4858219 |
gaacactgaagcaaataaacttcaactattccccagtgtgtgcac---------------gcagtttttgcagaaataagggaattaattattcttatac |
4858303 |
T |
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| Q |
201 |
atttgttactaattcaaattat |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
4858304 |
atttgttactaattcaaattat |
4858325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 5176383 - 5176253
Alignment:
| Q |
1 |
tttttaatgttttgggcacaaatcctcggtttaagccaataactccatcctctgccacaatatctgcatcaaccaaaaaattaatatggtatttacacaa |
100 |
Q |
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|||||||||||||||||| ||||||||||||||||||||| ||||||| | |||||||||| ||||||||||||||| |||| |||||||| |||||| |
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| T |
5176383 |
tttttaatgttttgggcatgaatcctcggtttaagccaatagctccatcttgtgccacaatacttgcatcaaccaaaaacttaacatggtattcacacaa |
5176284 |
T |
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| Q |
101 |
gaacactgaagaaaataaacttcaactattc |
131 |
Q |
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| T |
5176283 |
gaacactgaagcatataaacttaaactattc |
5176253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 155 - 219
Target Start/End: Complemental strand, 5176205 - 5176141
Alignment:
| Q |
155 |
aatgttgcagtttttgcaaaaataagggaattaattattcttatacatttgttactaattcaaat |
219 |
Q |
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| T |
5176205 |
aatgttgcagtttttgcacaaataagggtattaattaatcttatacatttgttaataattcaaat |
5176141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 12 - 85
Target Start/End: Original strand, 5133319 - 5133392
Alignment:
| Q |
12 |
ttgggcacaaatcctcggtttaagccaataactccatcctctgccacaatatctgcatcaaccaaaaaattaat |
85 |
Q |
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||||||||||||||||||| ||||||||||||||||| | |||||||||| || |||||| ||||| |||||| |
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| T |
5133319 |
ttgggcacaaatcctcggtacaagccaataactccatcttgtgccacaataccttcatcaatcaaaatattaat |
5133392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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