View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19252_low_2 (Length: 681)
Name: NF19252_low_2
Description: NF19252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19252_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 591; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 591; E-Value: 0
Query Start/End: Original strand, 20 - 669
Target Start/End: Complemental strand, 34426473 - 34425823
Alignment:
| Q |
20 |
tctgccaatccatgtcttattttaatgaatgcgctcacttgttatggagttgcttaactcactttctgtcgtttattgggtaacagatcccnnnnnnnng |
119 |
Q |
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| T |
34426473 |
tctgccaatccatgtcttattttaatgaatgcgctcacttgttatggagttgcttaactcactttctgtcgtttattgggtaacagatcccttttttttg |
34426374 |
T |
|
| Q |
120 |
gtgatgtttcttcccagaaagatccgtcaacatgcttaaaatacatatgttctatttatgattattatcgaaaggagtattgcacctttgataagagaca |
219 |
Q |
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| T |
34426373 |
gtgatgtttcttctcagaaagatccgtcaacatacttaaaatacatatgttctatttatgattattatcgaaaggagtattgcacctttgataagagaca |
34426274 |
T |
|
| Q |
220 |
aaattcttctaagattcacttgcctcttgtagtgaatacctctggctgggttaaaggtaagctcgtacattttgtatttttacgccacataaactactgc |
319 |
Q |
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| T |
34426273 |
aaattcttctaagattcacttgcctcttgtagtgaatacctctggctgggttaaaggtaagctcggacattttgtatttttccgccacataaactactgc |
34426174 |
T |
|
| Q |
320 |
ttttctcgaccaataacaatatatcaattattatgttactcattcagtgtgttttgtcttgcatttcaggcgatggttataaggtattagtgaacatgct |
419 |
Q |
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| T |
34426173 |
ttttctcgaccaataacaatatatcaattattatgttactcattcagtgtgttttgtcttgcatttcaggtgatggttataaggtattagtgaacatgct |
34426074 |
T |
|
| Q |
420 |
aaaatatattggtcccactcatatagttaagataggcatatccactgatctgaagaatttacctgttggaaagttcgggtcaaatgggaagaatgacaga |
519 |
Q |
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| T |
34426073 |
aaaatatattggtcccactcatatagttaagataggcatatccactgatctgaagaatatacctgttggaaagttcgggtcaaatgggaagaatgacaga |
34425974 |
T |
|
| Q |
520 |
agagttaaattgattgagatatatccagctcgtcaggactcatcgtaagcccaaatgttatatgttaccattttcagctgctagtttatttcaatatttt |
619 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34425973 |
agagttaaattgattgagatatatccagctcgtcaggactcatcgtaagcccaaatgttatatgttaccattttcagctgctagtttatttcaatatttt |
34425874 |
T |
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| Q |
620 |
ttagactt-aaagtattatagaataacagaatatccctacttgtttcccta |
669 |
Q |
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|||||||| ||||||||||||||||||| |||||||||||||||||||||| |
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| T |
34425873 |
ttagacttaaaagtattatagaataacaaaatatccctacttgtttcccta |
34425823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 285 - 467
Target Start/End: Complemental strand, 34419059 - 34418880
Alignment:
| Q |
285 |
tacattttgtatttttacgccacataaactactgcttttctcgaccaataacaatatatcaattattatgttactcattcagtgtgttttgtcttgcatt |
384 |
Q |
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||||||||||||||| || ||||||||||||||||| || ||| |||||| |||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
34419059 |
tacattttgtattttgacttaacataaactactgctttcctggac---taacaacatatcaattattatgttactcattcagttggttttgtcttgcatt |
34418963 |
T |
|
| Q |
385 |
tcaggcgatggttataaggtattagtgaacatgctaaaatatattggtcccactcatatagttaagataggcatatccactga |
467 |
Q |
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| T |
34418962 |
tcaggtgttggttatgaagtattagtggacatgctaaaatatattggtcccactcatgttgttaagatagacttatccactga |
34418880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 165 - 282
Target Start/End: Complemental strand, 34419216 - 34419099
Alignment:
| Q |
165 |
tatgttctatttatgattattatcgaaaggagtattgcacctttgataagagacaaaattcttctaagattcacttgcctcttgtagtgaatacctctgg |
264 |
Q |
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||||||| ||||||||| |||||| |||| ||||| |||||||||||||| || ||||| ||||||| ||||| ||||||| |||||||||| ||||| |
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| T |
34419216 |
tatgttccatttatgatcattatcaaaagaagtatcgcacctttgataagcgaaaaaatgcttctaaaattcagacgcctcttatagtgaatacttctgg |
34419117 |
T |
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| Q |
265 |
ctgggttaaaggtaagct |
282 |
Q |
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||||||||||||| |||| |
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| T |
34419116 |
ctgggttaaaggtgagct |
34419099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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