View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19252_low_5 (Length: 551)
Name: NF19252_low_5
Description: NF19252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19252_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 463; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 19 - 534
Target Start/End: Complemental strand, 500563 - 500048
Alignment:
| Q |
19 |
ctacaaggaaacaagatgcaagactttgttagtcacatgaactgaaatacaatacaatttttggtaactagtgcctatatgagcattcaaattttagatc |
118 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
500563 |
ctacaaggaaacaagatgaaagactttgttagtcacatgaactgtaatacaatacaatttttggtaactagtgcctatatgagcattcaaattttagatc |
500464 |
T |
|
| Q |
119 |
ataaaacataaaatttcatttatcacatagttaaaagataaatccataatcttaccttctttaataaccatgataggtttctccataatcttaccttgtt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
500463 |
ataaaacataaaatttcatttatcacatagttaaaagataaatccataatcttaccttctttaataaccatgataggtttctccataaccttaccttgtt |
500364 |
T |
|
| Q |
219 |
ggactgtccatttctttgttttcctttaacatcagcttccaaatggtttctcactctcaaaaccaaaccctattcttttttaaacaagcaccaaacccta |
318 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
500363 |
ggactgtccttttctttgttttcctttaacatcagcttccaaatggtttctcactctcaaaaccaaaccctattcttttttaaacaagcaccaaacccta |
500264 |
T |
|
| Q |
319 |
atcttcttctacattcttcctccaaatggtttctcacaccaccaaacctaagtctctgagtcccaaaagacgtgcaccccttcacaattccaacatacca |
418 |
Q |
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|||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |
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| T |
500263 |
atcttcttctacattcatcctccaaatggtttctcacacgaccaaacctaagtctcagagtcccaaaagacgtgcaccccttcacaatttcaacatacca |
500164 |
T |
|
| Q |
419 |
ttactgaagtagggtactcaacgcaatctcacatattgctccaataccgccattatcaatacgttggtgcttcaaccagccattcttcnnnnnnntacat |
518 |
Q |
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| T |
500163 |
ttactgaagtagggtactcaacgcaatctcacatattgctccaataccgccattatcaatacgttggtgcttcaaccagccattcttcaaaaaaatacat |
500064 |
T |
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| Q |
519 |
gaaagcaccgattaca |
534 |
Q |
| |
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|||||||||||||||| |
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| T |
500063 |
gaaagcaccgattaca |
500048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 91; Significance: 8e-44; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 286 - 506
Target Start/End: Complemental strand, 23103874 - 23103660
Alignment:
| Q |
286 |
ccctattcttttttaaacaagcaccaaaccctaatcttcttctacattcttcctccaaatggtttctcacaccaccaaacctaagtctctgagtcccaaa |
385 |
Q |
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||||| |||||||| |||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||| ||||| |||| ||||||||||| |
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| T |
23103874 |
ccctaatcttttttgaacaagcaccaaaccctattcttcttctacat----cctccaaatagtttctcacaccaccagacctatgtctttgagtcccaaa |
23103779 |
T |
|
| Q |
386 |
agacgtgcaccccttcacaattccaacataccattactgaagtagggtactcaacgcaatctcacatattgctccaataccgccattatcaata-cgttg |
484 |
Q |
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|||||| ||||| ||||||||| || ||||||||| || || |||| |||||||||||||||| |||| ||| ||| |||||||||||| || || |
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| T |
23103778 |
agacgtacaccctttcacaatttcactttaccattaccgacgtggggtgttcaacgcaatctcaca---tgcttcaacaccaccattatcaataccgctg |
23103682 |
T |
|
| Q |
485 |
gtgcttcaaccagccattcttc |
506 |
Q |
| |
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||||||||||||||| |||||| |
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| T |
23103681 |
gtgcttcaaccagcctttcttc |
23103660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 340 - 389
Target Start/End: Complemental strand, 23072766 - 23072717
Alignment:
| Q |
340 |
ccaaatggtttctcacaccaccaaacctaagtctctgagtcccaaaagac |
389 |
Q |
| |
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|||||||||||||||||||||| |||||| |||||||| |||||| |||| |
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| T |
23072766 |
ccaaatggtttctcacaccaccgaacctatgtctctgactcccaatagac |
23072717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 26 - 177
Target Start/End: Complemental strand, 19000445 - 19000299
Alignment:
| Q |
26 |
gaaacaagatgcaagactttgttagtcacatgaactgaaatacaatacaatttttggtaactagtg-cctatatgagcattcaaattttagatcataaaa |
124 |
Q |
| |
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|||||||||| ||||||| ||||||||||||||| | ||||| || |||||||| ||||| |||||||||||||||||||||||||| |||||| |
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| T |
19000445 |
gaaacaagatccaagactgtgttagtcacatgaatttaaatattat-----ttttggta-ctagtcacctatatgagcattcaaattttagattataaaa |
19000352 |
T |
|
| Q |
125 |
cataaaatttcatttatcacatagttaaaagataaatccataatcttaccttc |
177 |
Q |
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||| | |||||||||||| ||| | |||||||||||||| ||| |||||||| |
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| T |
19000351 |
catgatttttcatttatcagataatcaaaagataaatccacaatattaccttc |
19000299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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