View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19252_low_6 (Length: 488)
Name: NF19252_low_6
Description: NF19252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19252_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 9 - 311
Target Start/End: Original strand, 1545002 - 1545305
Alignment:
| Q |
9 |
gatatgaagatgtatgcaagttacaaatacctaattaaatatggtataatgattaaatcaaattgaaggattgagataatcactcaatttgat-attcat |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
1545002 |
gatatgaagatgtatgcaagttacaaatacctaattaaatatggtataatgattaaatcaaattgaaggattgagataatcactcaatttgattattcat |
1545101 |
T |
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| Q |
108 |
attattgcaacataagataaaatatgataatcgcttataataagctgttaacttgataaaatctagatcaaaacctaagtttaatttcttgtcaaataag |
207 |
Q |
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| T |
1545102 |
attattgcaacataagataaaatatgataatcacttataataagctgttaacttgataaaatctagatcaaaacctaagtttaatttcttgtcaaataag |
1545201 |
T |
|
| Q |
208 |
taacaaaatatgtaatcgattcaatttagtgaaaaatttgatggattcttagaacccctttgacaaaattgaatcggttcagttgttggtcaccttaaac |
307 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1545202 |
taacaaaatatgtaatcgattcaatttagtgaaaaatgtgatggattcttagaacccctttgacaaaattgaatcggttcagttgttggtcaccttaaac |
1545301 |
T |
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| Q |
308 |
aatg |
311 |
Q |
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|||| |
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| T |
1545302 |
aatg |
1545305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 352 - 469
Target Start/End: Original strand, 1545931 - 1546048
Alignment:
| Q |
352 |
aacagaaatttggtaccaaccatcaagcataacttgaatgttaaactaatgtaaatcatttcaaccacaaaagcatacacataaaagaagaaacaaaaag |
451 |
Q |
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| T |
1545931 |
aacagaaatttggtaccaaccatcaagcataacttgaatgttaaactaatgtaaatcatttcaaccacaaaagcatacacataaaagaagaaacaaaaag |
1546030 |
T |
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| Q |
452 |
aggttttattatgctata |
469 |
Q |
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||||||||||||| |||| |
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| T |
1546031 |
aggttttattatgttata |
1546048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 10 - 71
Target Start/End: Original strand, 1555774 - 1555835
Alignment:
| Q |
10 |
atatgaagatgtatgcaagttacaaatacctaattaaatatggtataatgattaaatcaaat |
71 |
Q |
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| T |
1555774 |
atatgaagatctatgcaagtcacatatacctaattaaatatagtctaatgattaaatcaaat |
1555835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 356 - 444
Target Start/End: Original strand, 3576738 - 3576826
Alignment:
| Q |
356 |
gaaatttggtaccaaccatcaagcataacttgaatgttaaactaatgtaaatcatttcaaccacaaaagcatacacataaaagaagaaa |
444 |
Q |
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| T |
3576738 |
gaaatttggaacaaacaatcaagcataacttggttgttaaactaatgtaaagcttttgaacaacaaaaacatttacaaaaaataagaaa |
3576826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 404
Target Start/End: Original strand, 23939355 - 23939390
Alignment:
| Q |
369 |
aaccatcaagcataacttgaatgttaaactaatgta |
404 |
Q |
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| T |
23939355 |
aaccatcaagcataacttgaatgttaaaataatgta |
23939390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 444
Target Start/End: Original strand, 24003640 - 24003715
Alignment:
| Q |
369 |
aaccatcaagcataacttgaatgttaaactaatgtaaatcatttcaaccacaaaagcatacacataaaagaagaaa |
444 |
Q |
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||||||||| |||||||||||||||||| ||||| | | | ||| ||| |||||| || || |||||||||||||| |
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| T |
24003640 |
aaccatcaaacataacttgaatgttaaaataatgcagagcttttgaacaacaaaaacacactcataaaagaagaaa |
24003715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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