View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19252_low_8 (Length: 469)

Name: NF19252_low_8
Description: NF19252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19252_low_8
NF19252_low_8
[»] chr6 (6 HSPs)
chr6 (13-448)||(33575485-33575920)
chr6 (29-124)||(5978666-5978761)
chr6 (42-111)||(33568636-33568705)
chr6 (149-199)||(5978591-5978641)
chr6 (220-271)||(33568470-33568521)
chr6 (26-72)||(19747033-19747079)
[»] chr3 (3 HSPs)
chr3 (29-118)||(36339760-36339849)
chr3 (243-286)||(36339586-36339629)
chr3 (147-199)||(36339679-36339731)
[»] scaffold0707 (2 HSPs)
scaffold0707 (42-111)||(5030-5099)
scaffold0707 (220-271)||(4864-4915)
[»] chr1 (2 HSPs)
chr1 (48-98)||(17954036-17954086)
chr1 (39-86)||(39379422-39379469)
[»] chr7 (5 HSPs)
chr7 (237-271)||(22020920-22020954)
chr7 (48-98)||(24035416-24035466)
chr7 (29-87)||(26237278-26237336)
chr7 (42-87)||(26229881-26229926)
chr7 (42-86)||(24391079-24391123)
[»] chr4 (2 HSPs)
chr4 (230-271)||(2910546-2910587)
chr4 (38-86)||(3557388-3557436)


Alignment Details
Target: chr6 (Bit Score: 352; Significance: 0; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 13 - 448
Target Start/End: Complemental strand, 33575920 - 33575485
Alignment:
Q  13 catcatttcccaaaataggaacgaaagggaaactttgaatatttctccaacaattatcacccaaattgaaaacttaaaccttgcttctccataaaccttt 112  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |||    
T  33575920 catcatttcccaaaataggaacgaaagggaaacttcgaatatttctccaacaattatcacccgaattgaaaactttaaccttgcttctccataaactttt 33575821  T
Q  113 gttctcgatctcnnnnnnnnnnnnnnnncctatttgaagtgccactaccttgtaagttccagttaaataatcataaccaacactgaatacaaaagtgcta 212  Q
    ||||||||||||                ||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  33575820 gttctcgatctctttttctttatttttacctatatgaagtgccactaccttgtaagttccggttaaataatcacaaccaacactgaatacaaaagtgcta 33575721  T
Q  213 tccctatagtcacgaagaaacccaaatttatcagatattgtccttgttgcagggttccaaacatagaaccagtacttaatgtgtgtcactaagcgtggcc 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33575720 tccctatagtcacgaagaaacccaaatttatcagatattgtccttgttgcagggttccaaacatagaaccagtacttaatgtgtgtcactaagcgtggcc 33575621  T
Q  313 tagaaagtaaaaatatcaatccgttgcaagaaccaacaaccagaggaaattcacttattatgggacagcggaagtggttaaaggcaacagcaattgaccg 412  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  33575620 tagaaagtaaaaatatcaatccgttgtaagaaccaacaaccagaggaaattcacttattatgggacagcggaagtggttaaaggcaacagcaattgacgg 33575521  T
Q  413 agtctcacgtacaagatgcaaggacaagacactagt 448  Q
    ||||||||||||||||||||||||||||||||||||    
T  33575520 agtctcacgtacaagatgcaaggacaagacactagt 33575485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 29 - 124
Target Start/End: Complemental strand, 5978761 - 5978666
Alignment:
Q  29 aggaacgaaagggaaactttgaatatttctccaacaattatcacccaaattgaaaacttaaaccttgcttctccataaacctttgttctcgatctc 124  Q
    |||||| ||||| ||||||||||| | ||||||||||  |||||||||| |||||||    |||||||||||||||||||||| | ||||| ||||    
T  5978761 aggaaccaaaggaaaactttgaatctctctccaacaaaaatcacccaaactgaaaaccctcaccttgcttctccataaaccttcggtctcggtctc 5978666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 42 - 111
Target Start/End: Complemental strand, 33568705 - 33568636
Alignment:
Q  42 aaactttgaatatttctccaacaattatcacccaaattgaaaacttaaaccttgcttctccataaacctt 111  Q
    |||||||||||||||||||||||| ||||||||||| ||||||||   ||||   |||||||||||||||    
T  33568705 aaactttgaatatttctccaacaactatcacccaaactgaaaactcgcacctcatttctccataaacctt 33568636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 149 - 199
Target Start/End: Complemental strand, 5978641 - 5978591
Alignment:
Q  149 aagtgccactaccttgtaagttccagttaaataatcataaccaacactgaa 199  Q
    |||||||||||||||||| |||||||||||||||||| |||| | ||||||    
T  5978641 aagtgccactaccttgtatgttccagttaaataatcacaaccgaaactgaa 5978591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 271
Target Start/End: Complemental strand, 33568521 - 33568470
Alignment:
Q  220 agtcacgaagaaacccaaatttatcagatattgtccttgttgcagggttcca 271  Q
    ||||||||| |||||| || || ||||||||||||| |||||||||||||||    
T  33568521 agtcacgaaaaaaccctaaattttcagatattgtccctgttgcagggttcca 33568470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 72
Target Start/End: Original strand, 19747033 - 19747079
Alignment:
Q  26 aataggaacgaaagggaaactttgaatatttctccaacaattatcac 72  Q
    ||||||||  ||||||||||| | |||||||||||||||||||||||    
T  19747033 aataggaatcaaagggaaactctcaatatttctccaacaattatcac 19747079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 29 - 118
Target Start/End: Complemental strand, 36339849 - 36339760
Alignment:
Q  29 aggaacgaaagggaaactttgaatatttctccaacaattatcacccaaattgaaaacttaaaccttgcttctccataaacctttgttctc 118  Q
    |||||| ||||||||||||||||||| |||||||||||||||||| ||| | ||||||   ||||||||||||||||||| || ||||||    
T  36339849 aggaaccaaagggaaactttgaatatatctccaacaattatcaccaaaactaaaaactgccaccttgcttctccataaactttcgttctc 36339760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 243 - 286
Target Start/End: Complemental strand, 36339629 - 36339586
Alignment:
Q  243 tcagatattgtccttgttgcagggttccaaacatagaaccagta 286  Q
    ||||||||||||||||||||||||||||||| | ||||||||||    
T  36339629 tcagatattgtccttgttgcagggttccaaaaacagaaccagta 36339586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 147 - 199
Target Start/End: Complemental strand, 36339731 - 36339679
Alignment:
Q  147 tgaagtgccactaccttgtaagttccagttaaataatcataaccaacactgaa 199  Q
    ||||| |||||||||||||||||||||||||||  |||| |||||| ||||||    
T  36339731 tgaagcgccactaccttgtaagttccagttaaacgatcacaaccaaaactgaa 36339679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0707 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: scaffold0707
Description:

Target: scaffold0707; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 42 - 111
Target Start/End: Complemental strand, 5099 - 5030
Alignment:
Q  42 aaactttgaatatttctccaacaattatcacccaaattgaaaacttaaaccttgcttctccataaacctt 111  Q
    |||||||||||||||||||||||| ||||||||||| ||||||||   ||||   |||||||||||||||    
T  5099 aaactttgaatatttctccaacaactatcacccaaactgaaaactcgcacctcatttctccataaacctt 5030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0707; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 271
Target Start/End: Complemental strand, 4915 - 4864
Alignment:
Q  220 agtcacgaagaaacccaaatttatcagatattgtccttgttgcagggttcca 271  Q
    ||||||||| |||||| || || ||||||||||||| |||||||||||||||    
T  4915 agtcacgaaaaaaccctaaattttcagatattgtccctgttgcagggttcca 4864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 48 - 98
Target Start/End: Original strand, 17954036 - 17954086
Alignment:
Q  48 tgaatatttctccaacaattatcacccaaattgaaaacttaaaccttgctt 98  Q
    |||||||||||||||||||||||||||||| || |||||| ||||| ||||    
T  17954036 tgaatatttctccaacaattatcacccaaactgtaaactttaacctcgctt 17954086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 86
Target Start/End: Original strand, 39379422 - 39379469
Alignment:
Q  39 gggaaactttgaatatttctccaacaattatcacccaaattgaaaact 86  Q
    |||||||||| |||||||||||||  ||||||||||||| ||||||||    
T  39379422 gggaaactttcaatatttctccaaacattatcacccaaactgaaaact 39379469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 237 - 271
Target Start/End: Complemental strand, 22020954 - 22020920
Alignment:
Q  237 aatttatcagatattgtccttgttgcagggttcca 271  Q
    ||||||||||||||||||||||| |||||||||||    
T  22020954 aatttatcagatattgtccttgtagcagggttcca 22020920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 48 - 98
Target Start/End: Complemental strand, 24035466 - 24035416
Alignment:
Q  48 tgaatatttctccaacaattatcacccaaattgaaaacttaaaccttgctt 98  Q
    |||||||||||||||||||||||||| | |||||||| || |||| |||||    
T  24035466 tgaatatttctccaacaattatcaccaagattgaaaattttaaccctgctt 24035416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 87
Target Start/End: Complemental strand, 26237336 - 26237278
Alignment:
Q  29 aggaacgaaagggaaactttgaatatttctccaacaattatcacccaaattgaaaactt 87  Q
    ||||||||  || ||||||||||||||||||||||| ||| |||||||| | |||||||    
T  26237336 aggaacgaccggaaaactttgaatatttctccaacagttaacacccaaactaaaaactt 26237278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 87
Target Start/End: Complemental strand, 26229926 - 26229881
Alignment:
Q  42 aaactttgaatatttctccaacaattatcacccaaattgaaaactt 87  Q
    ||||||||||||||||||||||| ||| |||||||| | |||||||    
T  26229926 aaactttgaatatttctccaacagttaccacccaaactaaaaactt 26229881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 42 - 86
Target Start/End: Complemental strand, 24391123 - 24391079
Alignment:
Q  42 aaactttgaatatttctccaacaattatcacccaaattgaaaact 86  Q
    |||||||||||||||||||||  ||||||||||||| | ||||||    
T  24391123 aaactttgaatatttctccaaatattatcacccaaactaaaaact 24391079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 271
Target Start/End: Complemental strand, 2910587 - 2910546
Alignment:
Q  230 aaacccaaatttatcagatattgtccttgttgcagggttcca 271  Q
    |||||| ||||||| ||||||||||||||| |||||||||||    
T  2910587 aaaccctaatttattagatattgtccttgtggcagggttcca 2910546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 38 - 86
Target Start/End: Complemental strand, 3557436 - 3557388
Alignment:
Q  38 agggaaactttgaatatttctccaacaattatcacccaaattgaaaact 86  Q
    ||||||||||| |||||||||||||  ||||||||| ||| ||||||||    
T  3557436 agggaaactttcaatatttctccaaacattatcacctaaactgaaaact 3557388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University