View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19253_high_1 (Length: 479)
Name: NF19253_high_1
Description: NF19253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19253_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 151; Significance: 1e-79; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 21 - 186
Target Start/End: Complemental strand, 2748848 - 2748682
Alignment:
| Q |
21 |
gctcctacatggattgttgcccttgtttgcagcgtcatcg-tcgcagtttcattcgccgctgaacgttctcttcattgtcttggcaactttcttaagaag |
119 |
Q |
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| T |
2748848 |
gctcctacatggattgttgcccttgtttgcagcgtcatcggtcgcagtttcattcgccgctgaatgttctcttcattgtcttggcaactttcttaagaag |
2748749 |
T |
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| Q |
120 |
aaaagccaaaaaccactttatcaagccctacagaaaattaaagaaggttatttataataatgaccta |
186 |
Q |
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| T |
2748748 |
aaaaaccaaaaaccactttatcaagccctacagaaaattaaagaaggttatttataataatgaccta |
2748682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 265 - 402
Target Start/End: Complemental strand, 2748603 - 2748466
Alignment:
| Q |
265 |
gcagagttgatgctgttgggattcatttctctatttctgactataacacaaaatgggataacaaaaatttgtgttcctgatgagtggacttatcatatgc |
364 |
Q |
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| T |
2748603 |
gcagagttgatgctgttgggattcatttctctatttctgactataacacaaaatgggataacaaaaatttgtgttcctgatgagtggacttatcatatgc |
2748504 |
T |
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| Q |
365 |
ttccttgtagtcttgaggagatagaagaagaagagatg |
402 |
Q |
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| T |
2748503 |
ttccttgtagtcttgaggagatagaagaagaagagatg |
2748466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 24 - 168
Target Start/End: Complemental strand, 2756909 - 2756765
Alignment:
| Q |
24 |
cctacatggattgttgcccttgtttgcagcgtcatcgtcgcagtttcattcgccgctgaacgttctcttcattgtcttggcaactttcttaagaagaaaa |
123 |
Q |
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| T |
2756909 |
cctacatgggttgttgctcttgtttgcactgtcatcgtcgctgtttcattcgcggtggaacgttctcttcattatcttggcaaggttcttaagaagaaaa |
2756810 |
T |
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| Q |
124 |
gccaaaaaccactttatcaagccctacagaaaattaaagaaggtt |
168 |
Q |
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| T |
2756809 |
atcagaaaccactctttgaagccttacaaaaaatcaaagaaggtt |
2756765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 417 - 466
Target Start/End: Complemental strand, 2748424 - 2748375
Alignment:
| Q |
417 |
tgtttctggcactgctcggcgccttcttggtggcggtggcggtgatgatg |
466 |
Q |
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| T |
2748424 |
tgtttctggcactgctcggcgccttcttggtggcggtggcggtggtgatg |
2748375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 265 - 375
Target Start/End: Complemental strand, 2756660 - 2756550
Alignment:
| Q |
265 |
gcagagttgatgctgttgggattcatttctctatttctgactataacacaaaatgggataacaaaaatttgtgttcctgatgagtggacttatcatatgc |
364 |
Q |
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| T |
2756660 |
gcagagttgatgattttgggttttatttcactgtttctaacggtaacacaaaatgggatgataaaaatttgtgttccggtagaatggactattcatatgc |
2756561 |
T |
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| Q |
365 |
ttccttgtagt |
375 |
Q |
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||||||||||| |
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| T |
2756560 |
ttccttgtagt |
2756550 |
T |
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