View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19253_low_1 (Length: 522)
Name: NF19253_low_1
Description: NF19253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19253_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 297 - 507
Target Start/End: Complemental strand, 326373 - 326163
Alignment:
| Q |
297 |
aatgctcctccatgagtgcaatgccagaagcactcgttttgcttatagattctttttcagcacactctttatatttgaaatttatgtcggtctcatcatt |
396 |
Q |
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| T |
326373 |
aatgctcctccatgagtgcaatgccagaagcactcgttttgcttatagattctttttcagcacactctttatatttgaaatttatgtcggtctcatcatt |
326274 |
T |
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| Q |
397 |
ttgagaataggtctcaatcaattaaaaatcgagtccaaatgatttagtgagactcatgtgaatttccttgaataatagagtgtgttatttgcgttactct |
496 |
Q |
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| T |
326273 |
ttgagaataggtctcaatcaattaaaaatcgagttcaaatgatttagtgagactcatgtgaatttccttgaataatagagtgtgttatttgcgttactct |
326174 |
T |
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| Q |
497 |
tttgattatgt |
507 |
Q |
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||||||||||| |
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| T |
326173 |
tttgattatgt |
326163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 53 - 343
Target Start/End: Original strand, 530887 - 531176
Alignment:
| Q |
53 |
atgatgtttcgtcgtattgcagaggtttcggagatgaggatcaacaccctgctaatgctattgaagaacctgttgcaatcagacaggatgaggaagccag |
152 |
Q |
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| T |
530887 |
atgatgtttcattgtattgcagaggtttcggagacgaggattaacaccctgctaatgctgttgaaaaacctcttgcaatcagacaggacgaggaagccag |
530986 |
T |
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| Q |
153 |
ttcaacaaatcatagcaaaggaaatggcgtctgggagctcaaaaagctgggtagcttaaagaaagtatagacctagagatctgtgcacgggaaaaccata |
252 |
Q |
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| T |
530987 |
ttcagcaaatcatagcaaaggaaatgtgg-ctgggagctcaaaaacctgggtagcttaaagaaagtataaacatatagatccgtgcatgggaaaaccatg |
531085 |
T |
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| Q |
253 |
aggaggagcctccttaaggagtgggctgttctaaattatcattcaatgctcctccatgagtgcaatgccagaagcactcgttttgcttata |
343 |
Q |
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| T |
531086 |
aggaagagcctccttaaggagtgggctgttctaaattattattcaatgctcctcggggagtgcaatgccggaagcactcgttttgcttata |
531176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 50 - 340
Target Start/End: Original strand, 517636 - 517924
Alignment:
| Q |
50 |
cttatgatgtttcgtcgtattgcagaggtttcggagatgaggatcaacaccctgctaatgctattgaagaacctgttgcaatcagacaggatgaggaagc |
149 |
Q |
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||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
517636 |
cttatgatgtttcgtcgtattgcagaggttttggagacgaggatcaaaaccctgctaatgctgttgaagaacctgttgcaatcagacaggatgaggaagc |
517735 |
T |
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| Q |
150 |
cagttcaacaaatcatagcaaaggaaatggcgtctgggagctcaaaaagctgggtagcttaaagaaagtatagacctagagatctgtgcacgggaaaacc |
249 |
Q |
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||||||| ||| |||||||||||||||| | ||||||||| ||||||| ||||||||||| |||||||||| |||| |||||| |||| || |||||| |
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| T |
517736 |
cagttcagcaactcatagcaaaggaaat-gtgtctgggagttcaaaaacctgggtagctt-aagaaagtattgaccaggagatccatgcaaggaaaaacc |
517833 |
T |
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| Q |
250 |
ataaggaggagcctccttaaggagtgggctgttctaaattatcattcaatgctcctccatgagtgcaatgccagaagcactcgttttgctt |
340 |
Q |
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|| |||| ||||||| || || |||||||| ||||||||| | |||||||||||||| ||||||||||| |||||||||| |||||||| |
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| T |
517834 |
atgaggaagagcctctttcagaagtgggctattctaaatttgtagtcaatgctcctccaagagtgcaatgcaagaagcactcattttgctt |
517924 |
T |
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