View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19253_low_3 (Length: 432)
Name: NF19253_low_3
Description: NF19253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19253_low_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 13 - 414
Target Start/End: Original strand, 36733674 - 36734075
Alignment:
| Q |
13 |
tggacatcatcaccttattggttcaatacctcaccaaggacttcataaactttcaacaaaatatggacctataatacaccttttcctaggttccatgcct |
112 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36733674 |
tggacatcttcaccttattggttcaatacctcaccaaggacttcacaaactttcaacaaaatatggacctataatacaccttttcctaggttccatgcct |
36733773 |
T |
|
| Q |
113 |
tgtgttgtagcttccacaccagaatccgctaaagagtttcttaaaactcacgaaacctatttctccaaccgtcctcaaagttcagctgttgattatctaa |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36733774 |
tgtgttgtagcttccacaccagaatccgctaaagagtttcttaaaactcacgaaacctatttctccaaccgtcctcaaagttcagctgttgattatctaa |
36733873 |
T |
|
| Q |
213 |
catatggctcacaagatttttcctttgctccatatggaccttattggaaatttatcaagaaaatatgcatgtctgaacttcttggtggtaacacattgag |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36733874 |
catatggctcacaagatttttcctttgctccatatggaccttattggaaatttatcaagaaaatatgcatgtctgaacttcttggtggtaacacattgag |
36733973 |
T |
|
| Q |
313 |
tcaacttcttcctttaaggagacaagagacaacaaggtttgttagttttttgctcaagaaagggaaggagaatgaggttattgatgttggaagagagctt |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36733974 |
tcaacttcttcctttaaggagacaagagacaacaaggtttgttagttttttgctcaagaaagggaaggagaatgaggttattgatgttggaagagagctt |
36734073 |
T |
|
| Q |
413 |
tt |
414 |
Q |
| |
|
|| |
|
|
| T |
36734074 |
tt |
36734075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 54 - 168
Target Start/End: Original strand, 25168110 - 25168224
Alignment:
| Q |
54 |
ttcataaactttcaacaaaatatggacctataatacaccttttcctaggttccatgccttgtgttgtagcttccacaccagaatccgctaaagagtttct |
153 |
Q |
| |
|
||||||| ||||||| |||||||||| ||||| || ||||||||||| || || |||||| | ||| |||| | |||||| || ||||||||||| |
|
|
| T |
25168110 |
ttcataagctttcaattcaatatggacccataattcaacttttcctaggctctataccttgtatagtaacttcaaatccagaaatagccaaagagtttct |
25168209 |
T |
|
| Q |
154 |
taaaactcacgaaac |
168 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
25168210 |
taaaactcacgaaac |
25168224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 183
Target Start/End: Original strand, 24939511 - 24939620
Alignment:
| Q |
74 |
tatggacctataatacaccttttcctaggttccatgccttgtgttgtagcttccacaccagaatccgctaaagagtttcttaaaactcacgaaacctatt |
173 |
Q |
| |
|
|||||||| ||||| || ||||||||||| ||| | |||||| | ||| |||| | ||| || || |||||||||||||||||||||||||| | | |
|
|
| T |
24939511 |
tatggacccataatgcaacttttcctaggctccgttccttgtatagtaacttcaagtccaaaaatagccaaagagtttcttaaaactcacgaaacttcct |
24939610 |
T |
|
| Q |
174 |
tctccaaccg |
183 |
Q |
| |
|
|||||||||| |
|
|
| T |
24939611 |
tctccaaccg |
24939620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University