View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19253_low_6 (Length: 329)
Name: NF19253_low_6
Description: NF19253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19253_low_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 10 - 313
Target Start/End: Complemental strand, 1543487 - 1543184
Alignment:
| Q |
10 |
ataatactataactccaatatataacagcttatacaatcataataaaaaatcaatagattataaagcaacccaaatgttaataacaaattattggtaaaa |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
1543487 |
ataatactataactccaatatataacagcttatacaatcataataaaaaatcaatagattataaagcaacccaaaggttaataacaaattattggtaaaa |
1543388 |
T |
|
| Q |
110 |
tgtctagtcgaaacatttcgtgttttgatccctgctactaacattttccgctcacctatcaaattaaccactaacatttgtctataaaccaatttggtac |
209 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1543387 |
tgtcaagtctaaacatttcgtgttttgatccctgctactaacattttccgctcacctatcaaattaaccactaacatttgtctataaaccaatttggtac |
1543288 |
T |
|
| Q |
210 |
ttagttgatataattagaaacaagagaaattacctccataatctttctccttcacattcaaataagaatcaggaagaacccaccgaactttgggtagttc |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
1543287 |
ttagttgatataattagaaacaagagaaattacctccataatctttctccttcacattcaaataagaatcaggaagaacccaccgaactttgggcagttc |
1543188 |
T |
|
| Q |
310 |
tgaa |
313 |
Q |
| |
|
|||| |
|
|
| T |
1543187 |
tgaa |
1543184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 229 - 311
Target Start/End: Complemental strand, 32425391 - 32425309
Alignment:
| Q |
229 |
acaagagaaattacctccataatctttctccttcacattcaaataagaatcaggaagaacccaccgaactttgggtagttctg |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
32425391 |
acaagagaaattacctccataatctttctcctccacattcaaataagaatcaggaagaacccaccgaactttgggaagttctg |
32425309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 239 - 311
Target Start/End: Complemental strand, 32420694 - 32420622
Alignment:
| Q |
239 |
ttacctccataatctttctccttcacattcaaataagaatcaggaagaacccaccgaactttgggtagttctg |
311 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||| ||||||| |
|
|
| T |
32420694 |
ttacctccataatctttctccctcacattcaaataagaatcaggaagaacccatcgaaccttgggcagttctg |
32420622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University