View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19253_low_8 (Length: 309)
Name: NF19253_low_8
Description: NF19253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19253_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 63 - 303
Target Start/End: Complemental strand, 7893045 - 7892805
Alignment:
| Q |
63 |
cggtaattcaacctttttaatgcagttgacaaggtatacctggattattagccgtgaatcgaattgcggtccaaccaccggttggaacgccaacggtgtt |
162 |
Q |
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| T |
7893045 |
cggtaattcaacctttttaatgcagttgacaaggtatacctggattattagccgtgaatcgaattgcggtccaaccaccagttggaacgccaacggtgtt |
7892946 |
T |
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| Q |
163 |
cctctccataggatcaaccaaattatattttgcagggtctttagcaggatcaaaattgccaattccagttccaacaacaaaaaagttataaccatgaaga |
262 |
Q |
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| T |
7892945 |
cctctccataggatcaaccaaattatatttagcagggtctttagctggatcaaaattgccaattccagttccaacaacaaaaaagttataaccatgaaga |
7892846 |
T |
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| Q |
263 |
tgaaatggatgtgattcaactgtgagaagattagtatcttg |
303 |
Q |
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| T |
7892845 |
tgaaatggatgtgattcaactgtgagaagattagtatcttg |
7892805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 122 - 300
Target Start/End: Complemental strand, 7903256 - 7903078
Alignment:
| Q |
122 |
cgaattgcggtccaaccaccggttggaacgccaacggtgttcctctccataggatcaaccaaattatattttgcagggtctttagcaggatcaaaattgc |
221 |
Q |
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| T |
7903256 |
cgaattgcggtccaaccacctgtaggaaccccaattgtgttcctttcaataggatctaccaagttgtatttggcagggtctttagcaggatcaaaattac |
7903157 |
T |
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| Q |
222 |
caattccagttccaacaacaaaaaagttataaccatgaagatgaaatggatgtgattcaactgtgagaagattagtatc |
300 |
Q |
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| T |
7903156 |
cgataccagttccgacaacgaaaaagttatatccatgaagatgaaatggatgtgattcaactgtgaggagattagtatc |
7903078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 7893105 - 7893071
Alignment:
| Q |
1 |
cgtaaaaaatgaaaatcttctaaattggatatcaa |
35 |
Q |
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| T |
7893105 |
cgtaaaaaatgaaaatcttctaaattggatatcaa |
7893071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 187
Target Start/End: Complemental strand, 29554734 - 29554646
Alignment:
| Q |
99 |
tacctggattattagccgtgaatcgaattgcggtccaaccaccggttggaacgccaacggtgttcctctccataggatcaaccaaatta |
187 |
Q |
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| T |
29554734 |
tacctggattatcagccctgaatctgatagcagtccatccaccagatggaacaccaactgtatttctctccacaggatcaaccaaatta |
29554646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 133 - 264
Target Start/End: Complemental strand, 22603803 - 22603672
Alignment:
| Q |
133 |
ccaaccaccggttggaacgccaacggtgttcctctccataggatcaaccaaattatattttgcagggtctttagcaggatcaaaattgccaattccagtt |
232 |
Q |
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| T |
22603803 |
ccaaccaccagcaggaacaccaacagtgttcctttcaacaggatcaaccaaattaaattttgcaggatctttattagcatcataatttccaaaaccttgt |
22603704 |
T |
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| Q |
233 |
ccaacaacaaaaaagttataaccatgaagatg |
264 |
Q |
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| T |
22603703 |
ccaacaacaaaaaaatcataaccatgaagatg |
22603672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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