View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19254_high_2 (Length: 336)
Name: NF19254_high_2
Description: NF19254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19254_high_2 |
 | |
|
| [»] scaffold0065 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 19 - 321
Target Start/End: Complemental strand, 27539910 - 27539608
Alignment:
| Q |
19 |
gaaattcaacaagatatacacgtttctgatcaagaaacagaagcagcaacgattcctctgcaaattgaattacatgatgcacacgaggagttagctcttg |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27539910 |
gaaattcaacaagatatacacgtttctgatcaagaaacataagcagcaacgattcctttgcaaattgaattacatgatgcacacgaggagttagctcttg |
27539811 |
T |
|
| Q |
119 |
tcagatcagaggcagtgcccactactttaccgactcctatggggagccataaagaaacagaaacaacaactgtttcattgcaaattgaaacaattcagaa |
218 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
27539810 |
tcagatcagaggcagtgcccactgctttaccgactcctatggggatccataaagaaacagaaacaacaacggcttcattgcaaattgaaacaattcagaa |
27539711 |
T |
|
| Q |
219 |
ccaaggggaagcaattctgatccaagaggaaacacatgatgcgcatgagagagtagttcctgtcatatcagaggctgtgcccgcagttttaccgactcct |
318 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
27539710 |
ccaaggggaagcaattccgatccaagaggaaacacatgatgcgcaggagggagtagttcctgtcagatcagaggcagtgcccgcagttttaccgactcct |
27539611 |
T |
|
| Q |
319 |
atg |
321 |
Q |
| |
|
||| |
|
|
| T |
27539610 |
atg |
27539608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 22 - 321
Target Start/End: Complemental strand, 16599761 - 16599462
Alignment:
| Q |
22 |
attcaacaagatatacacgtttctgatcaagaaacagaagcagcaacgattcctctgcaaattgaattacatgatgcacacgaggagttagctcttgtca |
121 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||| |
|
|
| T |
16599761 |
attcaacaagatatacacgtttctgaccaagaaacagaagcagcaacaattcctctgcaaattgaattacatgatgcgcacgaggagttagctcttatca |
16599662 |
T |
|
| Q |
122 |
gatcagaggcagtgcccactactttaccgactcctatggggagccataaagaaacagaaacaacaactgtttcattgcaaattgaaacaattcagaacca |
221 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
16599661 |
gatcagaggcagtgcccactgctttaccgactcctatggggagccataaagaaacagaaacaacaacgacttcattgcaaattgaaacaattcagaacca |
16599562 |
T |
|
| Q |
222 |
aggggaagcaattctgatccaagaggaaacacatgatgcgcatgagagagtagttcctgtcatatcagaggctgtgcccgcagttttaccgactcctatg |
321 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| || ||| ||||| ||||||||| ||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
16599561 |
aggggaagcaattccgatccaagaggaaacacatgatgctcaggagggagtaattcctgtcagatcagaggcaatgccctcagttttaccgactcctatg |
16599462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 164 - 321
Target Start/End: Complemental strand, 15200305 - 15200148
Alignment:
| Q |
164 |
gccataaagaaacagaaacaacaactgtttcattgcaaattgaaacaattcagaaccaaggggaagcaattctgatccaagaggaaacacatgatgcgca |
263 |
Q |
| |
|
||||| |||||| ||||||| |||| | ||||||| |||||||| || |||| ||||||||||||||||||| | ||||||| |||| ||| |||||||| |
|
|
| T |
15200305 |
gccatcaagaaatagaaacagcaacagcttcattgaaaattgaagcatttcaaaaccaaggggaagcaattccggtccaagatgaaatacaggatgcgca |
15200206 |
T |
|
| Q |
264 |
tgagagagtagttcctgtcatatcagaggctgtgcccgcagttttaccgactcctatg |
321 |
Q |
| |
|
||| |||||||||||||| |||||||| || | ||||||||||||||||||||| |
|
|
| T |
15200205 |
agaggaagtagttcctgtcagatcagaggtagtagctgcagttttaccgactcctatg |
15200148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 164 - 321
Target Start/End: Complemental strand, 15219390 - 15219233
Alignment:
| Q |
164 |
gccataaagaaacagaaacaacaactgtttcattgcaaattgaaacaattcagaaccaaggggaagcaattctgatccaagaggaaacacatgatgcgca |
263 |
Q |
| |
|
||||| |||||| ||||||| ||| | |||||||||||||||| || |||||||| ||||||||||||||| | ||||||| |||| ||| ||||||| |
|
|
| T |
15219390 |
gccatcaagaaatagaaacagcaatagcttcattgcaaattgaagcatttcagaactaaggggaagcaattccggtccaagatgaaatacaggatgcgcg |
15219291 |
T |
|
| Q |
264 |
tgagagagtagttcctgtcatatcagaggctgtgcccgcagttttaccgactcctatg |
321 |
Q |
| |
|
||| |||||||||||||| |||| |||| |||| ||||||||||| ||||||||| |
|
|
| T |
15219290 |
agaggaagtagttcctgtcagatcataggcagtgcttgcagttttaccaactcctatg |
15219233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0065 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0065
Description:
Target: scaffold0065; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 44 - 87
Target Start/End: Original strand, 41733 - 41776
Alignment:
| Q |
44 |
ctgatcaagaaacagaagcagcaacgattcctctgcaaattgaa |
87 |
Q |
| |
|
|||| ||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
41733 |
ctgagcaagaaacagaagcaacagcgattcctctgcaaattgaa |
41776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University