View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19254_high_3 (Length: 293)
Name: NF19254_high_3
Description: NF19254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19254_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 54302586 - 54302327
Alignment:
| Q |
1 |
actctaccttatatatatggattagtggtttgaaaaattaggagggataatgttttattatctaaattgtatatagttcactgtccaaaaattttgccag |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
54302586 |
actctaccttatatatatggattagtggtttgaaaaattaggagggataatgttttattatctaaattgtatatagttcactgtccaaattttttgccag |
54302487 |
T |
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| Q |
101 |
gaattcaattatacataaacaataaaattcaaagtccaaatgctcattatgagttatgagctagttaatcatttgtacagctctctttcaatcccattta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |
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| T |
54302486 |
gaattcaattatacataaacaataaaattcaaagtccaaatgctcattatgagttatgaactagttaatcatttgtacagctctctttcagtcccatttg |
54302387 |
T |
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| Q |
201 |
tatatatctcttcctttttgtggtattgtataaattgtgaatattatttacaactttttt |
260 |
Q |
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||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
54302386 |
tatatatttcttcctttttatggtattgtataaattgtgaatattatttacaactttttt |
54302327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 101 - 260
Target Start/End: Complemental strand, 54307890 - 54307731
Alignment:
| Q |
101 |
gaattcaattatacataaacaataaaattcaaagtccaaatgctcattatgagttatgagctagttaatcatttgtacagctctctttcaatcccattta |
200 |
Q |
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||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |
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| T |
54307890 |
gaatttaattgtacataaacaacaaaattcaaagtccaaatgctcattatgagttatgaactagttaatcatttgtacagctctctttcagtcccatttg |
54307791 |
T |
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| Q |
201 |
tatatatctcttcctttttgtggtattgtataaattgtgaatattatttacaactttttt |
260 |
Q |
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||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
54307790 |
tatatatttcttcctttttatggtattgtataaattgtgaatattatttacaactttttt |
54307731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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