View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19254_high_5 (Length: 250)
Name: NF19254_high_5
Description: NF19254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19254_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 144; Significance: 8e-76; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 35066571 - 35066400
Alignment:
| Q |
1 |
ctcttaaaatatattttctcaggcgtacccgtgtctctaccccttgacaaatttcctaggggttgatgccc-tcacatatgtctccggtaaataacagtt |
99 |
Q |
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| T |
35066571 |
ctcttaaaatatattttctcaggcgtacccgtgtctctaccccctgacaaatttcctagggattgatgcccctcacatatgtctccggcaaataacagtt |
35066472 |
T |
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| Q |
100 |
tttcttgtagtgatttgaatcatgagtatacactttactcggaacaaaattgcaattttgcatgtattggtt |
171 |
Q |
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| T |
35066471 |
tttcttgtagtgatttgaatcatgagtatacgctttattcggaacaaaattgcaattttgcatgtattggtt |
35066400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 195 - 239
Target Start/End: Complemental strand, 35066376 - 35066332
Alignment:
| Q |
195 |
gtctttgaaatgcaatcctttttatgtatttttatatctctctct |
239 |
Q |
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| T |
35066376 |
gtctttgaaatgcaatcctttttatgtatttttatatatctctct |
35066332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 171
Target Start/End: Original strand, 36291937 - 36291995
Alignment:
| Q |
112 |
atttgaatcatgagtatacactttactcggaacaaaattgcaattttgcatgtattggtt |
171 |
Q |
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| T |
36291937 |
atttgacttatgagtatacactt-acgcggaacaaaatttcaattttgcatgttttggtt |
36291995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 171
Target Start/End: Original strand, 1050656 - 1050693
Alignment:
| Q |
134 |
ttactcggaacaaaattgcaattttgcatgtattggtt |
171 |
Q |
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| T |
1050656 |
ttactccgaacaaaattgcaattttgcatgttttggtt |
1050693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 171
Target Start/End: Original strand, 43069433 - 43069481
Alignment:
| Q |
122 |
tgagtatacactttactcggaacaaaattgcaattttgcatgtattggtt |
171 |
Q |
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| T |
43069433 |
tgagtatacactt-acgcggaacaaaatttcaattttgcatgttttggtt |
43069481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 171
Target Start/End: Original strand, 29743861 - 29743909
Alignment:
| Q |
122 |
tgagtatacactttactcggaacaaaattgcaattttgcatgtattggtt |
171 |
Q |
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| T |
29743861 |
tgagtatacactt-acgcggaacaaaatttcaattttgcatgttttggtt |
29743909 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 171
Target Start/End: Complemental strand, 10352474 - 10352426
Alignment:
| Q |
122 |
tgagtatacactttactcggaacaaaattgcaattttgcatgtattggtt |
171 |
Q |
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| T |
10352474 |
tgagtatacactt-acacggaacaaaatttcaattttgcatgttttggtt |
10352426 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 171
Target Start/End: Complemental strand, 19565091 - 19565043
Alignment:
| Q |
122 |
tgagtatacactttactcggaacaaaattgcaattttgcatgtattggtt |
171 |
Q |
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||||||||||||| || |||||||||||| ||||||||||||| |||||| |
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| T |
19565091 |
tgagtatacactt-acgcggaacaaaatttcaattttgcatgttttggtt |
19565043 |
T |
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