View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19254_high_6 (Length: 237)
Name: NF19254_high_6
Description: NF19254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19254_high_6 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 4 - 237
Target Start/End: Complemental strand, 43446719 - 43446491
Alignment:
| Q |
4 |
atactaatatatgataaacatcaatcaagcaaaaaatgatcaaggaaacaaaatacatgagcaataaacaatggaaccattcttgtcatttcagttgccc |
103 |
Q |
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| T |
43446719 |
atactaatatatgataaacatcaatcaagcaaaaaatgatcaaagaaacaaaatacatgagcaataaacaatggaaccattcttgtcacttcagttgccc |
43446620 |
T |
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| Q |
104 |
aaatcacttaaagcaaagaacaacatgaaggacattttaagcggatgccccnnnnnnnnnnnnnggaagcttagatgttgttctctcaaagtaaagtact |
203 |
Q |
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| T |
43446619 |
aaatcacttaaagcaaagaacaacatgaaggacattttaagcggatgcccc-----aaaaaaaaggaagcttagatgttgttctctcaaagtaaagtact |
43446525 |
T |
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| Q |
204 |
aaactctgcaatagatacaagagaaatccttaac |
237 |
Q |
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| T |
43446524 |
aaactctgcaatagatacaagagaaatccttaac |
43446491 |
T |
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