View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19254_low_1 (Length: 420)
Name: NF19254_low_1
Description: NF19254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19254_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 6 - 403
Target Start/End: Original strand, 54302629 - 54303026
Alignment:
| Q |
6 |
tgtcgaagaatataaattatttccaattttcaaattgatttgagttcagaaatgtcttcatcatttgatgcactccaaaaacaatcagctgccgtagtga |
105 |
Q |
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| T |
54302629 |
tgtcaaagaaaataaattatttccaattttcaaattgatttgagttaagaaatgtcttcatcatttgatgcactccaaaaacaatcagctgccgtagtga |
54302728 |
T |
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| Q |
106 |
taatatagacttcaatacctcttaaagccaaatgatctgcaacaaattctctaatctgcagacaatttcaatgtaaagaaagagttaacacgatggcaac |
205 |
Q |
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| T |
54302729 |
taatatggacttcaatacctcttaaagccaaatgatccgcaacaaattctctaatctgcagacaatttgaatgtaaagaaagagctaacactatggcaac |
54302828 |
T |
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| Q |
206 |
tttagagcttgacattttgaaaaaagtaaagggtgatttcagaatnnnnnnngataaacctgtatatatggagcaccgttcgccactttatacatgacaa |
305 |
Q |
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| T |
54302829 |
tttagagcttgacattctgaaaaaagtaaagggtgatttcagaataaaaaaagataaacctgtatatatggagcatcgttcgccactttatatatgacaa |
54302928 |
T |
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| Q |
306 |
tcatgacttcctgctgcttccgtaacatttacagaaaaatgtcaccgcgttcatctctcatggccgatcgctgtatgtcatctgctaccactcataaa |
403 |
Q |
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| T |
54302929 |
tcatgacttcctgctgcttccgtaacatttacagaaaaatgtcaccacgttcatctctcatggccgatcgctgtatatcatctgctaccactcataaa |
54303026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 169
Target Start/End: Complemental strand, 31306903 - 31306850
Alignment:
| Q |
116 |
ttcaatacctcttaaagccaaatgatctgcaacaaattctctaatctgcagaca |
169 |
Q |
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| T |
31306903 |
ttcaatacctcttagtgccatattttctgcaacaaaatctctaatctgcagaca |
31306850 |
T |
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