View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19254_low_6 (Length: 292)
Name: NF19254_low_6
Description: NF19254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19254_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 87; Significance: 1e-41; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 55 - 261
Target Start/End: Complemental strand, 35760380 - 35760175
Alignment:
| Q |
55 |
ggaggaagaggtgtaggaaggaggggaaattttgcttatgcagacaaggtggctactcatagtccatggtataattgaagatcagattccttggactgca |
154 |
Q |
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| T |
35760380 |
ggaggaagaggaggaggaaggaggggaaatttttcttatgtggaaaaggtagctactcctggtgcatggtaaa--tgaagatcaagggccttggactgca |
35760283 |
T |
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| Q |
155 |
agaaaggactcatatgaatctgctaaagggccagttttgtaaaagtagctgaggatataagttttgttatctagg--tattatatatgtgatattatatc |
252 |
Q |
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| T |
35760282 |
tgcaaggactcctatgaagctgctaaagggtcagttttgtgaaagtagccgaggatataaattttg-tatctaggtatattatatatgtgatattatatc |
35760184 |
T |
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| Q |
253 |
atataagaa |
261 |
Q |
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||||||||| |
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| T |
35760183 |
atataagaa |
35760175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 56 - 255
Target Start/End: Complemental strand, 35785389 - 35785189
Alignment:
| Q |
56 |
gaggaagaggtgtaggaaggaggggaaattttgcttatgcagacaaggtggctactcatagtccatggtataattgaagatcagattccttggactgcaa |
155 |
Q |
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| T |
35785389 |
gaggaagaggaggaggaatgaggggaaattttaactatgtgcacaaggtagctactcctactgcatggtaaa--tgaagatcaaataccttgtactgcaa |
35785292 |
T |
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| Q |
156 |
gaaaggactcatatgaatctgctaaagggccagttttgtaaaagtagctgaggatataagttttgttatctag---gtattatatatgtgatattatatc |
252 |
Q |
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| T |
35785291 |
gcaaagactcatatgaatctgctaaagggtcagttttgtcaaagtggctgaggatataagtattattatctagttattattatatatgtgatattatatc |
35785192 |
T |
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| Q |
253 |
ata |
255 |
Q |
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||| |
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| T |
35785191 |
ata |
35785189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 56 - 170
Target Start/End: Complemental strand, 35765883 - 35765771
Alignment:
| Q |
56 |
gaggaagaggtgtaggaaggaggggaaattttgcttatgcagacaaggtggctactcatagtccatggtataattgaagatcagattccttggactgcaa |
155 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |||| ||||| ||| |||||||||||| | ||||||||||| |
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| T |
35765883 |
gaggaagaggtggaggaaggaggggaaattttgcttatgcagacaaggtaactactcctagtgcatgg--taaatgaagatcagatgctttggactgcaa |
35765786 |
T |
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| Q |
156 |
gaaaggactcatatg |
170 |
Q |
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|||||||||| |||| |
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| T |
35765785 |
gaaaggactcctatg |
35765771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 146 - 251
Target Start/End: Complemental strand, 35798739 - 35798635
Alignment:
| Q |
146 |
tggactgcaagaaaggactcatatgaatctgctaaagggccagttttgtaaaagtagctgaggatataagttttgttatctaggtattatatatgtgata |
245 |
Q |
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|||| |||||| |||||| | |||||| |||||| |||| ||||||||| ||||| | |||||||||||| |||| ||||||||||||||||||||| |
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| T |
35798739 |
tggagtgcaagcaaggacgcctatgaagctgctagagggtcagttttgtgaaagttggc-aggatataagttatgttttctaggtattatatatgtgatg |
35798641 |
T |
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| Q |
246 |
ttatat |
251 |
Q |
| |
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|||||| |
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| T |
35798640 |
ttatat |
35798635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 174 - 261
Target Start/End: Complemental strand, 35755146 - 35755055
Alignment:
| Q |
174 |
ctgctaaagggccagttttgtaaaagtagctgaggatataagttttgttatc----taggtattatatatgtgatattatatcatataagaa |
261 |
Q |
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||||| || |||| ||||||| ||||||| |||||||||||||||||||| | | ||| ||||||||||||||||| |||||||||||| |
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| T |
35755146 |
ctgctgaaaggcctgttttgtgaaagtagttgaggatataagttttgttaacttggttggtgttatatatgtgatattacatcatataagaa |
35755055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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