View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19255_high_2 (Length: 500)
Name: NF19255_high_2
Description: NF19255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19255_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 142; Significance: 3e-74; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 18 - 314
Target Start/End: Original strand, 5432500 - 5432817
Alignment:
| Q |
18 |
agaagcatgatcagcactaccaccaccttcactcattcttttcttcacttttaccctaattaccaaatcacatttaagactctatttgagttaatagaaa |
117 |
Q |
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| T |
5432500 |
agaagcatgatcagcactaccaccaccttcactcattcttttcttcacttttaccctaattaccaaatcacatttaagactctatttgagttaatag-aa |
5432598 |
T |
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| Q |
118 |
cataaca--------------------tagtctttaaaccacgacaaaacttttcgttcgagctacaaattatctaaaata-caaaataaaattttgtcc |
196 |
Q |
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| T |
5432599 |
cataacagacgaaaacagaaagaaatgtagtctttaaaccactacaaaattttttgtccgatctacagatgatttaaaataccaaaataaaattttgttc |
5432698 |
T |
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| Q |
197 |
attaaaattcgtataagac-nnnnnnnnttgttcaatattataaaagtttatcattttttatgttgtgttgttttatcttaaattgttatattaaatact |
295 |
Q |
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| T |
5432699 |
atcaaaattcgtacaagacaaaaaaaaaatgttcgatattataaaagtttattatttcttatgttgtgttgttttatcttaaattgttatattaaatact |
5432798 |
T |
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| Q |
296 |
tacattttagcatatcaaa |
314 |
Q |
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| T |
5432799 |
tacatttttgcatatcaaa |
5432817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 318 - 496
Target Start/End: Original strand, 5433740 - 5433918
Alignment:
| Q |
318 |
accctaactatcaagaatgagtaaaaatgtctcttnnnnnnnttatgaataaaaatgtatttactgtagggaccaaaaatgtctttaatgaattatagtg |
417 |
Q |
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| T |
5433740 |
accctaactatcaagaatgagtaaaaatatctcttaaaaaatatatgaataaaaatgtatttactgtagggaccaaaaatgtctttaatgaattatagtg |
5433839 |
T |
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| Q |
418 |
tattcgagtcaattattctcactacacaaagaactttagtgctaactttgaacttaacttggtcttagaataatatacc |
496 |
Q |
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| T |
5433840 |
tattcaattcaattattctcactacatgaagaactttagtgctaactttgaacttaacgtggtctcagaacaatgtacc |
5433918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 76
Target Start/End: Original strand, 5438991 - 5439029
Alignment:
| Q |
38 |
caccaccttcactcattcttttcttcacttttaccctaa |
76 |
Q |
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| T |
5438991 |
caccaccttcactcattcttttattcacttttaccctaa |
5439029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 258 - 326
Target Start/End: Complemental strand, 21100182 - 21100114
Alignment:
| Q |
258 |
gttgtgttgttttatcttaaattgttatattaaatacttacattttagcatatcaaatgtaccctaact |
326 |
Q |
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| T |
21100182 |
gttgtgttgttatatcttatactgttatattcaatacttactttttagtagatcaaatacaccctaact |
21100114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 215
Target Start/End: Original strand, 29992745 - 29992799
Alignment:
| Q |
161 |
tacaaattatctaaaatacaaaataaaattttgtccattaaaattcgtataagac |
215 |
Q |
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| T |
29992745 |
tacaagttatctaaaatacaaaataattttttgtccaccaaaaatcgtataagac |
29992799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 161 - 212
Target Start/End: Original strand, 30599058 - 30599110
Alignment:
| Q |
161 |
tacaaattatctaaaata-caaaataaaattttgtccattaaaattcgtataa |
212 |
Q |
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| T |
30599058 |
tacaaattatctaaaataccaaaataacattttgtcccctaaaaatcgtataa |
30599110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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