View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19255_high_6 (Length: 316)
Name: NF19255_high_6
Description: NF19255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19255_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 11 - 307
Target Start/End: Complemental strand, 43186421 - 43186125
Alignment:
| Q |
11 |
catagggtgcttttggttacattaatatgcttttgatgcagtgaagtataaagatggttactacattgaaagtaatcaaagtaaaggaagtgagatacac |
110 |
Q |
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| T |
43186421 |
catagggtgcttttggttacattaatatgcttttgatgcagtgaagtataaagatggttactacattgaaagtaatcaaagtaaaggaagtgagatacac |
43186322 |
T |
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| Q |
111 |
aaccttttggcttacagaaaggtgtagcaattataacagccatgattaagatcaagggctagaaaggaactgtcactttaagtttgttttaaaatagttt |
210 |
Q |
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| T |
43186321 |
aaccttttggcttacagaaaggtgtagcaattataacagccatgattaagatcaagggctagaaaggaactgtcactttaagtttgttttaaaatagttt |
43186222 |
T |
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| Q |
211 |
aatgcaatctatgtacttggtgtattttttaattagtgataatttgtaatattggttagctaaacaatgcaaaatacattctcttaagactagtgtc |
307 |
Q |
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| T |
43186221 |
aatgcaatctatgtacttggtgtattttttaattagtgataatttgtaatattggttagctaaacaatgcaaaatacattctcttatgactagtgtc |
43186125 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 265 - 305
Target Start/End: Complemental strand, 5039519 - 5039479
Alignment:
| Q |
265 |
gttagctaaacaatgcaaaatacattctcttaagactagtg |
305 |
Q |
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| T |
5039519 |
gttagctaaccaatgcaaaagacattctcttaagattagtg |
5039479 |
T |
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