View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19255_high_9 (Length: 267)
Name: NF19255_high_9
Description: NF19255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19255_high_9 |
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| [»] scaffold0130 (1 HSPs) |
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Alignment Details
Target: scaffold0130 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: scaffold0130
Description:
Target: scaffold0130; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 17 - 250
Target Start/End: Complemental strand, 18856 - 18618
Alignment:
| Q |
17 |
tagccggcgaaaccaaaccagctttggcgaacaattctggcgaataccaatccag-----acgttcgatttgtccaaacacgaggttattgatactccag |
111 |
Q |
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| T |
18856 |
tagccggcgaaaccaaaccaactttggcgaacaattctggcgaataccaatccagcttcgatgatcgatttgtccaaacacgaggctattgatactccag |
18757 |
T |
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| Q |
112 |
gtaccttggattttgattctcatcgattaaatattatatgatatagaaccctattattggtattgagatttgtagcaggtttacgttttgtcatattcaa |
211 |
Q |
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| T |
18756 |
gtaccttggattttgattctcatcatttaattcttatatgatatagaaccttattattggaattgagatttgtagcaggtttacgttttgtcatattcaa |
18657 |
T |
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| Q |
212 |
tatttttagctcggccgcatatgatttctacaaagtttc |
250 |
Q |
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| T |
18656 |
tatttttagctcggccgcatatgatttctacaaagtttc |
18618 |
T |
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Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 17 - 112
Target Start/End: Complemental strand, 40572157 - 40572057
Alignment:
| Q |
17 |
tagccggcgaaaccaaaccagctttggcgaacaattctggcgaataccaatccag-----acgttcgatttgtccaaacacgaggttattgatactccag |
111 |
Q |
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| T |
40572157 |
tagccggcgaaaccaaaccagctttggcgaacaattctggcgaataccaatccagcttcgacgatcaatttgtccaatcacgaggctattgatactccag |
40572058 |
T |
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| Q |
112 |
g |
112 |
Q |
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| T |
40572057 |
g |
40572057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 17 - 112
Target Start/End: Complemental strand, 19913663 - 19913563
Alignment:
| Q |
17 |
tagccggcgaaaccaaaccagctttggcgaacaattctggcgaataccaatccag-----acgttcgatttgtccaaacacgaggttattgatactccag |
111 |
Q |
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| T |
19913663 |
tagccggcgaaaccaaaccagctttggcgaacaattctggcgaataccaatccagcttcgacgatcaatttgtccaatcacgaggctattgatactccag |
19913564 |
T |
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| Q |
112 |
g |
112 |
Q |
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| T |
19913563 |
g |
19913563 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 185 - 251
Target Start/End: Complemental strand, 36284445 - 36284379
Alignment:
| Q |
185 |
agcaggtttacgttttgtcatattcaatatttttagctcggccgcatatgatttctacaaagtttct |
251 |
Q |
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| T |
36284445 |
agcaggtctacgttttgtcatgttcaatatttttagctcggccgcatatgatttctacaaaatttct |
36284379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 17 - 110
Target Start/End: Complemental strand, 10776727 - 10776629
Alignment:
| Q |
17 |
tagccggcgaaaccaaaccagctttggcgaacaattctggcgaataccaatcca-----gacgttcgatttgtccaaacacgaggttattgatactcca |
110 |
Q |
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| T |
10776727 |
tagccggcgaaaccaaaccagctttggcgagcaattctagcgaatatcaatccagcttcgaagatcaatttgtccaatcacgaggctattgatactcca |
10776629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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