View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19255_low_1 (Length: 568)
Name: NF19255_low_1
Description: NF19255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19255_low_1 |
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| [»] scaffold0202 (2 HSPs) |
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| [»] scaffold0016 (1 HSPs) |
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| [»] scaffold0272 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 257; Significance: 1e-143; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 231 - 555
Target Start/End: Original strand, 31042941 - 31043265
Alignment:
| Q |
231 |
tgtatctaaaacagcatcatcctcattctcacagacatgagaggtgaattggtgttgaatttcgtcgcagacatcttgttctaaggtctaaagaataaca |
330 |
Q |
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||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |
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| T |
31042941 |
tgtatctaaaacagcatcatcctgattctcacagccatgagaggtgaattggtgtataatttcttcgcagacatcttgttctaaggtctaaagaataaca |
31043040 |
T |
|
| Q |
331 |
tatacaaactttaggtcttttttgatataaaaagccatgacttaagctaataggataaagaaaaggttatagtttctctactcaatgagcaagcaggagt |
430 |
Q |
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|||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |
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| T |
31043041 |
tatacaaactttgggtctattttgatatgaaaagccatgacttaagctaataggataacgaaaaggttatagtttctctactgaatgagcaagcaggagt |
31043140 |
T |
|
| Q |
431 |
aataagtaacacccactttgaggagtcaaaatcttctccatttattagtctctccactttgagtcccacaccaataaaatgttaaacatcacataccaag |
530 |
Q |
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|||||||||||||||||||||| |||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31043141 |
aataagtaacacccactttgagaagtcaagatcctctccatttattagcttctccactttgagtcccacaccaataaaatgttaaacatcacataccaag |
31043240 |
T |
|
| Q |
531 |
tttacctataagaaaatattcgtct |
555 |
Q |
| |
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||||||||||| |||||||||||| |
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| T |
31043241 |
tttacctataaacaaatattcgtct |
31043265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 19 - 200
Target Start/End: Original strand, 31042767 - 31042951
Alignment:
| Q |
19 |
cacaacacataggccgttgatatcccttgaagtcgctgcatctggctgctactgcgtttgtaactttgtcgtcgtttcatcctcttcctcacacgccacc |
118 |
Q |
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||||||||||||||||||||||||| ||||||| ||||||||||||| ||| ||||| ||||| |||| |||||| ||||||||||||| ||||||||| |
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| T |
31042767 |
cacaacacataggccgttgatatcctttgaagttgctgcatctggcttctatagcgttcgtaaccttgtagtcgttgcatcctcttcctcgcacgccacc |
31042866 |
T |
|
| Q |
119 |
gtctctctatttgtgcaagttacagaag---ttaaagacttggaccatataatatgatgctgataaatacatattgtatttaaaa |
200 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||| ||||| |
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| T |
31042867 |
gtctctctatttgtgcaagttacagaagtaattaaagacttggaccatataatatgatcatgataaatacatactgtatctaaaa |
31042951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 35 - 307
Target Start/End: Original strand, 31106339 - 31106611
Alignment:
| Q |
35 |
ttgatatcccttgaagtcgctgcatctggctgctactgcgtttgtaactttgtcgtcgtttcatcctcttcctcacacgccaccgtctctctatttgtgc |
134 |
Q |
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|||||||||||||||||| |||| || || |||| ||||||| |||| ||||| ||||| ||| | |||||| || ||||||||||||||||||||| |
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| T |
31106339 |
ttgatatcccttgaagtcactgcttcgggatgctcctgcgttcataaccttgtcatcgttgcattcgcttccttgaacaccaccgtctctctatttgtgc |
31106438 |
T |
|
| Q |
135 |
aagttacagaagttaaagacttggaccatataatatgatgctgataaatacatattgtatttaaaatgattttgttaaatgtgacagtgtttcacgtgta |
234 |
Q |
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|||| || ||||| |||||||||||||||||||||||| || |||||||||| || |||||||||||||||||||||||||| ||||||||| ||| | |
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| T |
31106439 |
aagtcacgtaagttgaagacttggaccatataatatgataatggtaaatacataatgcatttaaaatgattttgttaaatgtgatagtgtttcatgtgca |
31106538 |
T |
|
| Q |
235 |
tctaaaacagcatcatcctcattctcacagacatgagaggtgaattggtgttgaatttcgtcgcagacatctt |
307 |
Q |
| |
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||||||| || |||||| ||| | ||||| |||| ||||||| | |||||||||| ||| || ||||| |||| |
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| T |
31106539 |
tctaaaaaagtatcatcgtcactgtcacatacataagaggtgcactggtgttgaaattcctctcagacgtctt |
31106611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 120 - 259
Target Start/End: Complemental strand, 31094907 - 31094768
Alignment:
| Q |
120 |
tctctctatttgtgcaagttacagaagttaaagacttggaccatataatatgatgctgataaatacatattgtatttaaaatgattttgttaaatgtgac |
219 |
Q |
| |
|
||||||||||||||| |||||| ||||| |||||||||||||||||||||||| || ||||||||| ||||||||||||| |||||||||||| ||| |
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| T |
31094907 |
tctctctatttgtgctagttacttaagttgaagacttggaccatataatatgatcatgggaaatacataatgtatttaaaatggttttgttaaatgcgac |
31094808 |
T |
|
| Q |
220 |
agtgtttcacgtgtatctaaaacagcatcatcctcattct |
259 |
Q |
| |
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||| |||| ||| |||||||| || |||||| ||||||| |
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| T |
31094807 |
ggtgcttcatgtgcatctaaaaaagtatcatcatcattct |
31094768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 27 - 265
Target Start/End: Original strand, 31050321 - 31050554
Alignment:
| Q |
27 |
ataggccgttgatatcccttgaagtcgctgcatctggctgctactgcgtttgtaactttgtcgtcgtttcatcctcttcctcacacgccaccgtctctct |
126 |
Q |
| |
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||||| |||| ||||||| || |||||||| ||| ||||||||||| |||||||| ||||||| | ||||||| ||| ||| | || ||||||| |
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| T |
31050321 |
atagggcgttaatatcccatgcggtcgctgcttctagctgctactgcatttgtaaccccgtcgtcgctgcatcctccaactcgtacgacgccatctctct |
31050420 |
T |
|
| Q |
127 |
atttgtgcaagttacagaagttaaagacttggaccatataatatgatgctgataaatacatattgtatttaaaatgattttgttaaatgtgacagtgttt |
226 |
Q |
| |
|
|||||||| |||||| ||||| ||||||||||||||||| |||||| | | |||||||| ||||||||||||| ||||||||| |||||| || |
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| T |
31050421 |
atttgtgctagttactcaagttgaagacttggaccatatagtatgatcatagttaatacataatgtatttaaaatggttttgttaa-----acagtgctt |
31050515 |
T |
|
| Q |
227 |
cacgtgtatctaaaacagcatcatcctcattctcacaga |
265 |
Q |
| |
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|| ||| |||||||| | ||||||| ||||||| ||||| |
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| T |
31050516 |
catgtgcatctaaaaaaacatcatcgtcattctaacaga |
31050554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 318 - 375
Target Start/End: Original strand, 31108510 - 31108567
Alignment:
| Q |
318 |
ctaaagaataacatatacaaactttaggtcttttttgatataaaaagccatgacttaa |
375 |
Q |
| |
|
||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||| |
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|
| T |
31108510 |
ctaaagaataatatatacaaactttgggtctattttgatataaaaagccatgacttaa |
31108567 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 190 - 260
Target Start/End: Complemental strand, 21181631 - 21181561
Alignment:
| Q |
190 |
tgtatttaaaatgattttgttaaatgtgacagtgtttcacgtgtatctaaaacagcatcatcctcattctc |
260 |
Q |
| |
|
|||||| ||||||||| |||||||||||||| ||||||| | | |||||||| ||||||||| | |||||| |
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|
| T |
21181631 |
tgtattaaaaatgattatgttaaatgtgacaatgtttcatgagcatctaaaaaagcatcatcattattctc |
21181561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 181 - 248
Target Start/End: Complemental strand, 21150347 - 21150280
Alignment:
| Q |
181 |
aatacatattgtatttaaaatgattttgttaaatgtgacagtgtttcacgtgtatctaaaacagcatc |
248 |
Q |
| |
|
|||| ||| |||||||||| ||||| |||||||||||| ||||||||| ||| |||||| | |||||| |
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| T |
21150347 |
aatatataatgtatttaaattgattatgttaaatgtgagagtgtttcatgtgcatctaataaagcatc |
21150280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0202 (Bit Score: 92; Significance: 2e-44; HSPs: 2)
Name: scaffold0202
Description:
Target: scaffold0202; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 50 - 265
Target Start/End: Complemental strand, 3693 - 3478
Alignment:
| Q |
50 |
gtcgctgcatctggctgctactgcgtttgtaactttgtcgtcgtttcatcctcttcctcacacgccaccgtctctctatttgtgcaagttacagaagtta |
149 |
Q |
| |
|
|||||||| |||||||||||| || |||||||| ||||||| | |||||||||||||| ||| |||| |||||| |||||||| |||||| |||||| |
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|
| T |
3693 |
gtcgctgcttctggctgctaccgcatttgtaaccccgtcgtcgctgcatcctcttcctcatacgacaccatctctccatttgtgctagttactgaagttg |
3594 |
T |
|
| Q |
150 |
aagacttggaccatataatatgatgctgataaatacatattgtatttaaaatgattttgttaaatgtgacagtgtttcacgtgtatctaaaacagcatca |
249 |
Q |
| |
|
|||||||||||| ||||||||||| || ||||||||| ||||||||||||| |||||||||||||| ||||| |||| ||| ||||||| || |||| |
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|
| T |
3593 |
aagacttggaccttataatatgatcatgggaaatacataatgtatttaaaatggttttgttaaatgtggcagtgcttcatgtgcttctaaaaaagtatca |
3494 |
T |
|
| Q |
250 |
tcctcattctcacaga |
265 |
Q |
| |
|
|| ||||||| ||||| |
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| T |
3493 |
tcgtcattctaacaga |
3478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0202; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 407
Target Start/End: Complemental strand, 3431 - 3374
Alignment:
| Q |
351 |
tttgatataaaaagccatgacttaagctaataggataaagaaaagg-ttatagtttct |
407 |
Q |
| |
|
|||||||||||| ||||||| |||| ||||| |||||| ||||||| ||||||||||| |
|
|
| T |
3431 |
tttgatataaaatgccatgagttaaactaatgggataatgaaaaggcttatagtttct |
3374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 179 - 260
Target Start/End: Original strand, 65192 - 65273
Alignment:
| Q |
179 |
taaatacatattgtatttaaaatgattttgttaaatgtgacagtgtttcacgtgtatctaaaacagcatcatcctcattctc |
260 |
Q |
| |
|
|||||| ||| |||||||| ||||||| |||||||||||| ||||||||| ||| || ||||| |||||| || |||||||| |
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|
| T |
65192 |
taaatatataatgtatttacaatgattatgttaaatgtgatagtgtttcatgtgcatttaaaaaagcatcttcatcattctc |
65273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 453 - 486
Target Start/End: Complemental strand, 2805368 - 2805335
Alignment:
| Q |
453 |
gagtcaaaatcttctccatttattagtctctcca |
486 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
2805368 |
gagtcaaaatcttctccatttattagtctctcca |
2805335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0272 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0272
Description:
Target: scaffold0272; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 220
Target Start/End: Original strand, 3453 - 3494
Alignment:
| Q |
179 |
taaatacatattgtatttaaaatgattttgttaaatgtgaca |
220 |
Q |
| |
|
|||||||||| |||||| ||||||||| |||||||||||||| |
|
|
| T |
3453 |
taaatacataatgtattcaaaatgattctgttaaatgtgaca |
3494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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