View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19255_low_11 (Length: 266)
Name: NF19255_low_11
Description: NF19255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19255_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 12106203 - 12105952
Alignment:
| Q |
1 |
caaacctctgctgcttccgccacgccacctgctgtaacgcatactccaactcattaaccgaatagtactgctgcataagaagcacttgattccaattaat |
100 |
Q |
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| T |
12106203 |
caaacctctgctgcttccgccacgccacctgctgtaacgcatactccacctcattaaccgaatagtactgctgcataagaagcacttgattccaattaat |
12106104 |
T |
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| Q |
101 |
tctcctctgctgaattgcaccaacaacatgatcatactcaccactctcaccagcaacacctaaatgctgacacaaacaatctataatcgcattcgcagct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12106103 |
tctcctctgctgaattgcaccaacaacatgatcatactcaccactctcaccagcaacacctaaatgctgacacaaacaatctataatcgcattcgcagct |
12106004 |
T |
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| Q |
201 |
gcaaattcgctgcgaagccaattcataaacccatctctctcatccacaaacc |
252 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12106003 |
gcaaattcgctgcgaagccaattcataaacccatctctctcatccacaaacc |
12105952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 12089566 - 12089315
Alignment:
| Q |
1 |
caaacctctgctgcttccgccacgccacctgctgtaacgcatactccaactcattaaccgaatagtactgctgcataagaagcacttgattccaattaat |
100 |
Q |
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|||||||||||||| || ||||||||||||||| |||||||| | | ||| ||||||||| | |||||||||||||| ||||||||||||||||||| |
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| T |
12089566 |
caaacctctgctgccgcctccacgccacctgctgcaacgcatatgcaacctcgttaaccgaaaaatactgctgcataagcagcacttgattccaattaac |
12089467 |
T |
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| Q |
101 |
tctcctctgctgaattgcaccaacaacatgatcatactcaccactctcaccagcaacacctaaatgctgacacaaacaatctataatcgcattcgcagct |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||| |
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| T |
12089466 |
cctcctctgctgaattgcaccaacaacatgatcatactcaccactctcaccaataacacctaaatgctgacacaaacaatcaataatagcattcgcagca |
12089367 |
T |
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| Q |
201 |
gcaaattcgctgcgaagccaattcataaacccatctctctcatccacaaacc |
252 |
Q |
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|| |||||||| |||| ||||||||||||||||||||||||||| ||||||| |
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| T |
12089366 |
gcgaattcgctacgaatccaattcataaacccatctctctcatcaacaaacc |
12089315 |
T |
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