View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19255_low_12 (Length: 265)
Name: NF19255_low_12
Description: NF19255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19255_low_12 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 18 - 265
Target Start/End: Complemental strand, 27382108 - 27381846
Alignment:
| Q |
18 |
atgttacacatgagttgtgctctacaacttggtttgataatgatattttcatttctctagagtaatatgcatgtttgctataacaaatagtttgccccaa |
117 |
Q |
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| T |
27382108 |
atgttacacatgagttgtgctctacaacttggtttgataatgatattttcatttctctagagtaatatgcatgtttgctataacaaatagtttgtcccaa |
27382009 |
T |
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| Q |
118 |
gaaattatg------------acagtcatcatgatattaaacatgtatgtgagatgata---nnnnnnnnnattataaaaattacattggtattcaatnn |
202 |
Q |
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| T |
27382008 |
gaaattatgacagaaattatgacagtcatcatgatattaaacatgtatgtgagatgatatatttttttgttattataaaaattacattggtattcaataa |
27381909 |
T |
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| Q |
203 |
nnnnncatgtatgtctaatggtgtaaagactgataattgatttgaagatgtttatctatatct |
265 |
Q |
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| T |
27381908 |
aaaaacatgtatgtctaatggtgtaaagattgataattgatttgaagatgtttatctatatct |
27381846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 20 - 155
Target Start/End: Complemental strand, 27390677 - 27390542
Alignment:
| Q |
20 |
gttacacatgagttgtgctctacaacttggtttgataatgatattttcatttctctagagtaatatgcatgtttgctataacaaatagtttgccccaaga |
119 |
Q |
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| T |
27390677 |
gttacacatgaattgtgctctacaacttggtttgataatgatattttcatttctctagagtaatatgcatgtttgctataacaaatagtttgccccaaga |
27390578 |
T |
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| Q |
120 |
aattatgacagtcatcatgatattaaacatgtatgt |
155 |
Q |
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| T |
27390577 |
aattatgatagtcatcgtgatattaaacatgtatgt |
27390542 |
T |
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