View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19255_low_13 (Length: 259)
Name: NF19255_low_13
Description: NF19255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19255_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 9 - 258
Target Start/End: Original strand, 12106192 - 12106441
Alignment:
| Q |
9 |
agcataggtttgtgaagccggttgttaaggagtttaggaaggttaagcaatggcagaggtttgagacttccaatgttaaggaaggtagtaattctagtgt |
108 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
12106192 |
agcagaggtttgtgaagccggttgttaaggagtttaggaaggttaagcaatggcagaggtttgaggcttccaatgttaaggaaggtagtaattctagtgt |
12106291 |
T |
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| Q |
109 |
tgaaatgcatagtaacaaagcgaattcaacggttaaagagactcgagttgttgacaagatcgaagaaattaaatgtgagggcatgtttggaaccaaggat |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
12106292 |
tgaaatgcatagtaacaaagcgaattcaacggttaaagagactcgagttgttgacaagatcgaagaaattaaatgtgagggcatggttggaaccaaggat |
12106391 |
T |
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| Q |
209 |
gataagatttcagacattgccgaggacaagaaaggtaaataacgggtttg |
258 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12106392 |
gataagatttcagacattgccgaggacaagaaaggtaaataacgggtttg |
12106441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 12089555 - 12089659
Alignment:
| Q |
9 |
agcataggtttgtgaagccggttgttaaggagtttaggaaggttaagcaatggcagaggtttgagacttccaatgttaaggaaggtagtaattctagtgt |
108 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| | |||| ||||||||| |||||||||||||| |
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| T |
12089555 |
agcagaggtttgtgaagccggttgttaaggagtttaggaagggtaggcaatggcagaggtttgagggtgggaatggtaaggaagggagtaattctagtgt |
12089654 |
T |
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| Q |
109 |
tgaaa |
113 |
Q |
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|||| |
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| T |
12089655 |
agaaa |
12089659 |
T |
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