View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19255_low_3 (Length: 467)

Name: NF19255_low_3
Description: NF19255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19255_low_3
NF19255_low_3
[»] chr3 (10 HSPs)
chr3 (98-183)||(7604539-7604623)
chr3 (19-95)||(6550345-6550420)
chr3 (17-94)||(6527539-6527615)
chr3 (17-95)||(6849120-6849197)
chr3 (38-95)||(6789468-6789524)
chr3 (17-89)||(6558868-6558939)
chr3 (17-81)||(6785698-6785761)
chr3 (17-89)||(6797246-6797317)
chr3 (117-149)||(6938353-6938385)
chr3 (382-442)||(13884905-13884965)
[»] scaffold0425 (1 HSPs)
scaffold0425 (17-95)||(12225-12302)
[»] chr7 (1 HSPs)
chr7 (286-314)||(30239777-30239805)


Alignment Details
Target: chr3 (Bit Score: 66; Significance: 5e-29; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 98 - 183
Target Start/End: Complemental strand, 7604623 - 7604539
Alignment:
Q  98 aaggtatgattagttgataactttttaccagatattcttaaacaaggtgtagtatataataagaatttatggatcaatgtcatttt 183  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |||||| |||||||    
T  7604623 aaggtatgattagttgataactttttaccagatattcttaaacgaggtgtagta-ataataagaatttatgtatcaatttcatttt 7604539  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 6550345 - 6550420
Alignment:
Q  19 aaattgcatcacatcatcctttccctacgttttacattcaaacatagctaagataacatataattacctcagtggca 95  Q
    |||||||||||||| || ||||||||| ||||||||||||||||||| |||||||||||||||||| |||| |||||    
T  6550345 aaattgcatcacattattctttcccta-gttttacattcaaacatagttaagataacatataattatctcactggca 6550420  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 17 - 94
Target Start/End: Original strand, 6527539 - 6527615
Alignment:
Q  17 ataaattgcatcacatcatcctttccctacgttttacattcaaacatagctaagataacatataattacctcagtggc 94  Q
    |||||||||||||  ||||| |||||||| ||||||||||||||||||| |||||| ||||||||||| |||| ||||    
T  6527539 ataaattgcatcatgtcatcttttcccta-gttttacattcaaacatagttaagatcacatataattatctcactggc 6527615  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 17 - 95
Target Start/End: Original strand, 6849120 - 6849197
Alignment:
Q  17 ataaattgcatcacatcatcctttccctacgttttacattcaaacatagctaagataacatataattacctcagtggca 95  Q
    |||||||||||||  ||||| ||||| || ||||||||||||||||||| |||||| ||||||||||| |||| |||||    
T  6849120 ataaattgcatcatgtcatcttttccgta-gttttacattcaaacatagttaagatcacatataattatctcactggca 6849197  T

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Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 38 - 95
Target Start/End: Original strand, 6789468 - 6789524
Alignment:
Q  38 tttccctacgttttacattcaaacatagctaagataacatataattacctcagtggca 95  Q
    |||||||| |||||||||||||||| ||||||||||||||||||||| |||| |||||    
T  6789468 tttcccta-gttttacattcaaacacagctaagataacatataattatctcactggca 6789524  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 6558868 - 6558939
Alignment:
Q  17 ataaattgcatcacatcatcctttccctacgttttacattcaaacatagctaagataacatataattacctca 89  Q
    |||||||||| |||||||||  ||||||| |||||| |||||||||||  |||||||||||||||||| ||||    
T  6558868 ataaattgcaacacatcatctcttcccta-gttttaaattcaaacataattaagataacatataattatctca 6558939  T

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Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 6785698 - 6785761
Alignment:
Q  17 ataaattgcatcacatcatcctttccctacgttttacattcaaacatagctaagataacatataa 81  Q
    ||||||||| ||||||||||||||||||| | ||||| ||||||||||  |||||||||||||||    
T  6785698 ataaattgcttcacatcatcctttcccta-gctttacgttcaaacataattaagataacatataa 6785761  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 6797246 - 6797317
Alignment:
Q  17 ataaattgcatcacatcatcctttccctacgttttacattcaaacatagctaagataacatataattacctca 89  Q
    |||||||||||||||||| | ||||||||  ||||| |||||| ||||  |||||||||| ||||||| ||||    
T  6797246 ataaattgcatcacatcaacttttcccta-tttttaaattcaatcataattaagataacacataattatctca 6797317  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 149
Target Start/End: Complemental strand, 6938385 - 6938353
Alignment:
Q  117 actttttaccagatattcttaaacaaggtgtag 149  Q
    ||||||||||| |||||||||||||||||||||    
T  6938385 actttttaccaaatattcttaaacaaggtgtag 6938353  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 382 - 442
Target Start/End: Original strand, 13884905 - 13884965
Alignment:
Q  382 gtattattgcttagaaccatcttaaagcacctagcaaactatgcctatttgtaccatgtga 442  Q
    ||||||||||||| ||| || |||||||||||| ||||| ||||||| || |||| |||||    
T  13884905 gtattattgcttacaactatgttaaagcacctaacaaaccatgcctaattataccctgtga 13884965  T

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Target: scaffold0425 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 17 - 95
Target Start/End: Original strand, 12225 - 12302
Alignment:
Q  17 ataaattgcatcacatcatcctttccctacgttttacattcaaacatagctaagataacatataattacctcagtggca 95  Q
    |||||||||||||  ||||| ||||| || ||||||||||||||||||| |||||| ||||||||||| |||| |||||    
T  12225 ataaattgcatcatgtcatcttttccgta-gttttacattcaaacatagttaagatcacatataattatctcactggca 12302  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 286 - 314
Target Start/End: Complemental strand, 30239805 - 30239777
Alignment:
Q  286 tgaagcttgtttagctttaggttgtgttt 314  Q
    |||||||||||||||||||||||||||||    
T  30239805 tgaagcttgtttagctttaggttgtgttt 30239777  T

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